Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   QMK16_RS06860 Genome accession   NZ_CP125396
Coordinates   1315460..1315975 (-) Length   171 a.a.
NCBI ID   WP_002858355.1    Uniprot ID   A0A1D9BMJ9
Organism   Campylobacter jejuni strain SKBC57     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1310460..1320975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK16_RS06845 (QMK16_06845) - 1310572..1312389 (-) 1818 WP_071615869.1 motility associated factor glycosyltransferase family protein -
  QMK16_RS06850 (QMK16_06850) - 1312386..1314209 (-) 1824 WP_002858102.1 motility associated factor glycosyltransferase family protein -
  QMK16_RS06855 (QMK16_06855) - 1314219..1315460 (-) 1242 WP_002858295.1 DUF2920 family protein -
  QMK16_RS06860 (QMK16_06860) ctsG 1315460..1315975 (-) 516 WP_002858355.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  QMK16_RS06865 (QMK16_06865) tsaD 1315976..1316983 (-) 1008 WP_002858276.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  QMK16_RS06870 (QMK16_06870) - 1316980..1318374 (-) 1395 WP_002915833.1 M99 family carboxypeptidase catalytic domain-containing protein -
  QMK16_RS06875 (QMK16_06875) dxr 1318376..1319446 (-) 1071 WP_002853864.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  QMK16_RS06880 (QMK16_06880) cdsA 1319443..1320168 (-) 726 WP_002858027.1 phosphatidate cytidylyltransferase -
  QMK16_RS06885 (QMK16_06885) - 1320177..1320515 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18779.58 Da        Isoelectric Point: 5.2731

>NTDB_id=831899 QMK16_RS06860 WP_002858355.1 1315460..1315975(-) (ctsG) [Campylobacter jejuni strain SKBC57]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEISKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFIDRADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGEM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=831899 QMK16_RS06860 WP_002858355.1 1315460..1315975(-) (ctsG) [Campylobacter jejuni strain SKBC57]
ATGAGAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATCTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCGGAGATTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGACATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTCAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAGATAGAGCGGA
TTTTATACTCATGGGAATTTCAAGTAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGCAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCAAGTAAAACTTATCTTTTAATAGGGGAAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D9BMJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.398

100

0.924