Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   QMK12_RS06215 Genome accession   NZ_CP125395
Coordinates   1228737..1229252 (-) Length   171 a.a.
NCBI ID   WP_283155438.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC94     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1223737..1234252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK12_RS06200 (QMK12_06200) - 1223842..1225572 (-) 1731 WP_283155435.1 flagellin A -
  QMK12_RS06205 (QMK12_06205) - 1225660..1227480 (-) 1821 WP_283155436.1 motility associated factor glycosyltransferase family protein -
  QMK12_RS06210 (QMK12_06210) - 1227490..1228737 (-) 1248 WP_283155437.1 DUF2920 family protein -
  QMK12_RS06215 (QMK12_06215) ctsG 1228737..1229252 (-) 516 WP_283155438.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  QMK12_RS06220 (QMK12_06220) tsaD 1229253..1230260 (-) 1008 WP_283155439.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  QMK12_RS06225 (QMK12_06225) - 1230257..1231651 (-) 1395 WP_088303619.1 M99 family carboxypeptidase catalytic domain-containing protein -
  QMK12_RS06230 (QMK12_06230) dxr 1231653..1232723 (-) 1071 WP_052825499.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  QMK12_RS06235 (QMK12_06235) cdsA 1232720..1233445 (-) 726 WP_052825500.1 phosphatidate cytidylyltransferase -
  QMK12_RS06240 (QMK12_06240) - 1233456..1233794 (-) 339 WP_002855905.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18805.71 Da        Isoelectric Point: 7.1358

>NTDB_id=831871 QMK12_RS06215 WP_283155438.1 1228737..1229252(-) (ctsG) [Campylobacter jejuni strain SKBC94]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGIENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENVDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGRM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=831871 QMK12_RS06215 WP_283155438.1 1228737..1229252(-) (ctsG) [Campylobacter jejuni strain SKBC94]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTAGGAATTTTAGCTGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAATAATCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGACCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGATTGAAAATGTCGATCTTAGTAAT
TTTAACGGCATAAAAGAAGTAAATTTTCGTGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAGGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAGGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATGTAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAATCTA
GCGAGCAAAACTTATCTTTTAATAGGGAGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

95.322

100

0.953