Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   U0543_RS17275 Genome accession   NZ_CP139836
Coordinates   3596743..3598500 (+) Length   585 a.a.
NCBI ID   WP_001020905.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain B84     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3591743..3603500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0543_RS17255 (U0543_17255) - 3592642..3593511 (+) 870 WP_029424510.1 PhzF family phenazine biosynthesis protein -
  U0543_RS17260 (U0543_17260) - 3593565..3594344 (-) 780 WP_000718711.1 ferredoxin--NADP reductase -
  U0543_RS17265 (U0543_17265) tsaA 3594449..3595177 (+) 729 WP_071543219.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  U0543_RS17270 (U0543_17270) - 3595187..3596455 (-) 1269 WP_001052948.1 DUF4010 domain-containing protein -
  U0543_RS17275 (U0543_17275) pilB 3596743..3598500 (+) 1758 WP_001020905.1 GspE/PulE family protein Machinery gene
  U0543_RS17280 (U0543_17280) - 3598582..3598941 (+) 360 WP_000783090.1 NirD/YgiW/YdeI family stress tolerance protein -
  U0543_RS17285 (U0543_17285) - 3599049..3599711 (+) 663 WP_001221456.1 response regulator transcription factor -
  U0543_RS17290 (U0543_17290) - 3599708..3601066 (+) 1359 WP_001257352.1 cell wall metabolism sensor histidine kinase WalK -
  U0543_RS17295 (U0543_17295) hemP 3601132..3601302 (-) 171 WP_029424508.1 hemin uptake protein HemP -
  U0543_RS17300 (U0543_17300) - 3601439..3602338 (+) 900 WP_002132239.1 NUDIX domain-containing protein -
  U0543_RS17305 (U0543_17305) - 3602360..3602911 (-) 552 WP_000913439.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 66829.60 Da        Isoelectric Point: 7.0338

>NTDB_id=831859 U0543_RS17275 WP_001020905.1 3596743..3598500(+) (pilB) [Acinetobacter baumannii strain B84]
MNIHVEIDTHWCLEQLLQEGRITERDKLLVQTTNRQKDQLKWHPLQWIAHFNLKDQHHVQAHLSLNRLCQWFADRAQLPL
FVIDPLKADVSALTQVMSQEFAIRNHILAVEVHADRIVIGTDQPFQTDWLNNLEKSLAPKKIERVFLNPEQLQRYLREYY
QVSRAVNSAQKDAAHDRDNKGVEALLQLGDSQNPDANDQHIVKLVDWILQFAFEQSASDIHMEPRKDNGKVRFRIDGVLH
TIYNMPSNTLTAVISRIKILGRLNVAEKRKPQDGRLKTRTPKGQETELRLSTLPTAFGEKLVMRIFDPDVLVRSFQQLGF
DQSLLQQWQRITQNSHGIILVTGPTGSGKTTTLYSSLKQLATEQVNVCTIEDPIEMLEPSFNQMQVNHAIELGFADGVRA
LMRQDPDIIMIGEIRDQDTANMAIQAALTGHLVLSTLHTNDAPSSLTRLHDLGVQPFLTAATILGVLAQRLVRKLCPHCK
QQTHINEDEWQHLTFDYIMEMPEKVYRAVGCEECRHTGYKGRIGIYEFMPVSLELKHLISSHATLNELRSQTKKESVEPL
RIAGARKVIEGLTTLEEVLRVVPLN

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=831859 U0543_RS17275 WP_001020905.1 3596743..3598500(+) (pilB) [Acinetobacter baumannii strain B84]
ATGAATATACATGTAGAAATAGACACACATTGGTGTCTAGAACAACTATTACAAGAAGGCCGTATCACTGAACGAGATAA
GTTACTTGTACAAACCACAAATAGGCAAAAAGATCAGTTGAAATGGCATCCATTACAGTGGATTGCGCATTTTAATTTAA
AAGACCAACATCATGTACAAGCACATTTAAGTTTAAACCGTCTGTGCCAATGGTTTGCAGATCGGGCGCAATTACCTTTA
TTTGTGATTGATCCTTTAAAGGCAGATGTGAGTGCTTTAACTCAAGTCATGTCGCAAGAGTTTGCGATCCGTAATCATAT
TTTAGCTGTAGAAGTCCATGCGGACCGGATTGTGATAGGAACAGACCAGCCTTTTCAAACAGACTGGCTAAATAATTTAG
AGAAGAGTTTAGCACCCAAAAAAATTGAACGGGTATTTCTCAACCCGGAGCAATTACAACGTTATTTACGAGAATATTAT
CAAGTTAGCCGTGCAGTAAACTCAGCTCAAAAAGATGCGGCTCATGACCGTGATAACAAAGGTGTAGAAGCGCTTTTACA
ACTTGGCGATAGCCAAAACCCTGATGCCAATGATCAGCATATTGTGAAATTAGTAGACTGGATATTGCAATTTGCATTTG
AACAGAGCGCCAGTGACATTCACATGGAACCGCGTAAAGACAATGGCAAAGTTCGGTTCCGTATCGATGGTGTTTTACAT
ACCATTTATAACATGCCTTCAAATACTCTGACCGCCGTGATTTCTCGGATTAAAATTTTAGGGCGTCTAAATGTAGCAGA
AAAGCGTAAACCGCAAGATGGTCGTTTAAAAACACGTACGCCGAAAGGACAAGAAACCGAACTACGTCTATCTACCTTAC
CAACAGCGTTTGGTGAAAAACTGGTTATGCGTATTTTTGATCCAGATGTACTAGTACGTTCTTTTCAGCAATTAGGTTTC
GACCAGTCTTTATTACAGCAATGGCAGCGTATTACGCAAAATAGTCACGGCATTATTTTGGTTACGGGGCCAACAGGTTC
TGGTAAAACTACAACGTTATATTCTTCTTTAAAACAGCTTGCAACCGAGCAGGTCAATGTCTGTACCATTGAAGATCCGA
TTGAAATGCTAGAGCCTAGTTTTAACCAAATGCAGGTCAATCATGCAATTGAACTGGGCTTTGCAGATGGTGTACGTGCG
CTTATGCGACAAGACCCAGACATTATTATGATTGGGGAAATTCGTGACCAAGATACTGCGAATATGGCCATTCAAGCTGC
ACTCACAGGCCATTTAGTATTATCAACTTTACATACCAATGATGCGCCGTCTAGTTTGACCCGTTTACACGATTTAGGCG
TACAACCATTTTTAACAGCCGCGACTATTTTAGGTGTATTAGCGCAGCGCTTAGTGCGTAAGCTTTGCCCGCACTGCAAA
CAACAAACTCATATTAATGAAGATGAATGGCAGCACCTAACATTTGACTACATTATGGAAATGCCAGAAAAAGTTTATCG
GGCAGTAGGTTGTGAAGAGTGCCGGCATACGGGTTATAAAGGTCGAATCGGCATTTATGAGTTTATGCCAGTTAGTCTTG
AGCTTAAACATCTTATTAGCAGTCATGCGACATTAAATGAATTAAGAAGCCAAACTAAAAAAGAAAGTGTAGAGCCTTTA
AGAATTGCAGGAGCTCGCAAAGTTATTGAAGGTTTGACCACCTTGGAAGAGGTGCTGCGGGTTGTTCCATTAAATTAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(63-162)

Type II/IV secretion system protein (T2SSE)

(209-474)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.331

100

0.378