Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   U0543_RS11155 Genome accession   NZ_CP139836
Coordinates   2314790..2316055 (+) Length   421 a.a.
NCBI ID   WP_001285409.1    Uniprot ID   A0ABX6CPG9
Organism   Acinetobacter baumannii strain B84     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2309790..2321055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0543_RS11125 (U0543_11125) mutY 2309960..2310994 (-) 1035 WP_029424044.1 A/G-specific adenine glycosylase -
  U0543_RS11130 (U0543_11130) - 2311135..2311497 (-) 363 WP_000130110.1 HIT family protein -
  U0543_RS11135 (U0543_11135) - 2311683..2312420 (-) 738 WP_000100768.1 dienelactone hydrolase family protein -
  U0543_RS11140 (U0543_11140) - 2312591..2312749 (-) 159 WP_000490267.1 DUF1328 domain-containing protein -
  U0543_RS11145 (U0543_11145) - 2312944..2313402 (+) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  U0543_RS11150 (U0543_11150) - 2313515..2314684 (+) 1170 WP_077932461.1 PQQ-dependent sugar dehydrogenase -
  U0543_RS11155 (U0543_11155) rarA 2314790..2316055 (+) 1266 WP_001285409.1 replication-associated recombination protein A Machinery gene
  U0543_RS11160 (U0543_11160) - 2316070..2316909 (-) 840 WP_000349494.1 formate/nitrite transporter family protein -
  U0543_RS11165 (U0543_11165) - 2317195..2317398 (-) 204 WP_029424046.1 hypothetical protein -
  U0543_RS11170 (U0543_11170) purC 2317591..2318310 (-) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  U0543_RS11175 (U0543_11175) - 2318347..2318949 (-) 603 WP_001177091.1 hypothetical protein -
  U0543_RS11180 (U0543_11180) dapA 2318965..2319858 (-) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  U0543_RS11185 (U0543_11185) pncA 2320188..2320832 (+) 645 WP_001985076.1 bifunctional nicotinamidase/pyrazinamidase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46932.60 Da        Isoelectric Point: 5.8354

>NTDB_id=831829 U0543_RS11155 WP_001285409.1 2314790..2316055(+) (rarA) [Acinetobacter baumannii strain B84]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=831829 U0543_RS11155 WP_001285409.1 2314790..2316055(+) (rarA) [Acinetobacter baumannii strain B84]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGAGTA
AAAGAATTACGTGAAGTAATTGCAGAAAGTGGTGACTTACTGACCCCTGTAGTTTTTATTGACGAAATCCACCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAGGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCTCGTAAGGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CCATTACCAATGCGGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATTAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCACGGATGCTTAAAGG
TGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCCTTGGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAGCTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCAGAGCACTTTGTACTGCAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCTTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.75

95.012

0.387