Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   QMK08_RS06515 Genome accession   NZ_CP125386
Coordinates   1280912..1281427 (-) Length   171 a.a.
NCBI ID   WP_002888104.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC41     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1275912..1286427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK08_RS06500 (QMK08_06500) - 1276017..1277831 (-) 1815 WP_201464503.1 motility associated factor glycosyltransferase family protein -
  QMK08_RS06505 (QMK08_06505) - 1277828..1279651 (-) 1824 WP_283146533.1 motility associated factor glycosyltransferase family protein -
  QMK08_RS06510 (QMK08_06510) - 1279662..1280912 (-) 1251 WP_070241071.1 DUF2920 family protein -
  QMK08_RS06515 (QMK08_06515) ctsG 1280912..1281427 (-) 516 WP_002888104.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  QMK08_RS06520 (QMK08_06520) tsaD 1281428..1282435 (-) 1008 WP_002868457.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  QMK08_RS06525 (QMK08_06525) - 1282432..1283826 (-) 1395 WP_002888103.1 M99 family carboxypeptidase catalytic domain-containing protein -
  QMK08_RS06530 (QMK08_06530) dxr 1283828..1284898 (-) 1071 WP_038817243.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  QMK08_RS06535 (QMK08_06535) cdsA 1284895..1285620 (-) 726 WP_002858027.1 phosphatidate cytidylyltransferase -
  QMK08_RS06540 (QMK08_06540) - 1285629..1285967 (-) 339 WP_022552380.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18636.48 Da        Isoelectric Point: 6.4682

>NTDB_id=831762 QMK08_RS06515 WP_002888104.1 1280912..1281427(-) (ctsG) [Campylobacter jejuni strain SKBC41]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=831762 QMK08_RS06515 WP_002888104.1 1280912..1281427(-) (ctsG) [Campylobacter jejuni strain SKBC41]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAACAACCTTAAAACTTTGATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942