Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   OPT60_RS03900 Genome accession   NZ_CP125359
Coordinates   747543..748409 (+) Length   288 a.a.
NCBI ID   WP_084916319.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain UT_10236     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 742543..753409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPT60_RS03875 (OPT60_03875) atpD 743579..744985 (+) 1407 WP_003057452.1 F0F1 ATP synthase subunit beta -
  OPT60_RS03880 (OPT60_03880) - 744998..745414 (+) 417 WP_002985233.1 F0F1 ATP synthase subunit epsilon -
  OPT60_RS03885 (OPT60_03885) - 745743..745979 (+) 237 WP_274047614.1 DUF1146 family protein -
  OPT60_RS03890 (OPT60_03890) murA 746044..747315 (+) 1272 WP_015016870.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  OPT60_RS03895 (OPT60_03895) - 747319..747507 (+) 189 WP_046177788.1 DNA-directed RNA polymerase subunit beta -
  OPT60_RS03900 (OPT60_03900) endA 747543..748409 (+) 867 WP_084916319.1 DNA/RNA non-specific endonuclease Machinery gene
  OPT60_RS03905 (OPT60_03905) pheS 748692..749735 (+) 1044 WP_003057440.1 phenylalanine--tRNA ligase subunit alpha -
  OPT60_RS03910 (OPT60_03910) pheT 749945..752350 (+) 2406 WP_003057457.1 phenylalanine--tRNA ligase subunit beta -
  OPT60_RS03915 (OPT60_03915) - 752460..752837 (+) 378 WP_003057473.1 OsmC family protein -
  OPT60_RS03920 (OPT60_03920) - 752830..753216 (+) 387 WP_003057418.1 DUF1722 domain-containing protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31974.99 Da        Isoelectric Point: 10.0750

>NTDB_id=831219 OPT60_RS03900 WP_084916319.1 747543..748409(+) (endA) [Streptococcus dysgalactiae subsp. equisimilis strain UT_10236]
MLTRKKRKRVLNSFLLILLVLGSSYLAKSDFIASNHPIKQIYRTVLGDKDESSSESKEVYSEVPTEALSASVLTKSIKEQ
LGSNIEWNGAGAYIINRNKTDLNASVASLPYANNETKWVQGQKVPTRANALLTKSTRQYRNRYQTDNAYRTFKPAGWHQL
HHLKGNYDHAVDRGHLLGYALVGGLKGFDASTSNPDNIATQLSWANQADKPYSTGQNYYEGLVRRALDKGKRVRYRVTLL
YDGDNLLASGSQLEAKSADGSLAFNVFVPNVQAGLTVDYRTGQIAINP

Nucleotide


Download         Length: 867 bp        

>NTDB_id=831219 OPT60_RS03900 WP_084916319.1 747543..748409(+) (endA) [Streptococcus dysgalactiae subsp. equisimilis strain UT_10236]
ATGTTAACAAGGAAAAAACGAAAAAGGGTGCTTAATTCCTTCTTATTGATTTTGTTAGTGTTGGGGTCTAGTTACCTTGC
TAAGAGTGATTTCATAGCTAGCAATCATCCTATTAAGCAAATTTATCGTACCGTTTTGGGAGATAAGGATGAATCATCAT
CAGAATCAAAAGAAGTCTATAGTGAGGTTCCCACAGAAGCCCTATCCGCTTCTGTCTTGACCAAATCCATTAAGGAACAA
TTAGGTTCCAATATTGAATGGAATGGAGCAGGCGCCTATATTATCAACAGGAACAAAACAGATTTAAACGCAAGCGTAGC
CAGTCTGCCCTATGCCAATAATGAAACCAAATGGGTCCAAGGACAAAAGGTTCCTACTAGAGCTAATGCCTTACTTACTA
AGTCGACACGACAGTATCGAAATCGCTATCAAACGGACAATGCTTATCGTACCTTCAAGCCTGCTGGTTGGCACCAATTA
CATCACTTAAAAGGAAATTATGACCACGCAGTTGATAGAGGACATTTGCTAGGTTATGCTTTAGTCGGTGGACTGAAAGG
TTTTGATGCATCTACCAGTAATCCTGATAACATTGCTACTCAACTAAGTTGGGCCAATCAAGCAGATAAACCCTATTCGA
CAGGTCAAAATTACTATGAAGGATTAGTACGTCGTGCATTGGATAAGGGCAAAAGGGTACGTTATCGTGTTACCTTGCTT
TATGATGGTGATAACCTGTTAGCCAGTGGTAGCCAGTTAGAGGCCAAATCTGCCGATGGGAGTTTAGCATTTAACGTGTT
TGTTCCAAATGTTCAAGCAGGGCTGACGGTTGATTATCGAACAGGACAGATTGCCATCAATCCCTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(121-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

62.338

80.208

0.5
  endA Streptococcus pneumoniae D39

62.338

80.208

0.5
  endA Streptococcus pneumoniae R6

62.338

80.208

0.5
  endA Streptococcus pneumoniae TIGR4

62.338

80.208

0.5