Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   QL286_RS06880 Genome accession   NZ_CP125299
Coordinates   1440734..1443091 (+) Length   785 a.a.
NCBI ID   WP_194219428.1    Uniprot ID   -
Organism   Pseudalkalibacillus hwajinpoensis strain MABIK MI00000821     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1435734..1448091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL286_RS06850 - 1436026..1436511 (+) 486 WP_194219422.1 small multi-drug export protein -
  QL286_RS06855 - 1436601..1436858 (+) 258 WP_226614507.1 post-transcriptional regulator -
  QL286_RS22195 secDF 1436970..1439184 (+) 2215 Protein_1364 protein translocase subunit SecDF -
  QL286_RS06870 - 1439319..1440227 (+) 909 WP_194219426.1 cation diffusion facilitator family transporter -
  QL286_RS06875 - 1440266..1440601 (+) 336 WP_194219427.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  QL286_RS06880 recJ 1440734..1443091 (+) 2358 WP_194219428.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QL286_RS06885 - 1443092..1443604 (+) 513 WP_194219429.1 adenine phosphoribosyltransferase -
  QL286_RS06890 - 1443774..1445954 (+) 2181 WP_194219430.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  QL286_RS06895 dtd 1445974..1446417 (+) 444 WP_194219431.1 D-aminoacyl-tRNA deacylase -
  QL286_RS06900 - 1446511..1447932 (-) 1422 WP_242057290.1 N-acetylmuramoyl-L-alanine amidase -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88144.38 Da        Isoelectric Point: 4.7131

>NTDB_id=830978 QL286_RS06880 WP_194219428.1 1440734..1443091(+) (recJ) [Pseudalkalibacillus hwajinpoensis strain MABIK MI00000821]
MLRSKTRWKLAETDETNIDRLQSELGISRLAASLLVNRGIEGEEEAKRFLYKENLTYHDPYLMDGMKESVERIQQAIASG
ERILIFGDYDADGVSSTTVLVYTLRELGAIFDYYIPNRFTEGYGPNEAAFRQAKEDGYQLIVTVDTGISGVHEAEVAKEI
GIDLIITDHHEPPPVLPDSYATINPKKPGCGYPFKGLAGVGVAFKLAQALLGRIPGDLLEIAAMGTIADLVPLQDENRLL
ASEGIRALQNSNKPGIKALLDVCGLKGQELNEEHLGFGIGPRLNAAGRLDSADPAVELLTTDDPILAEQLASDIDALNKN
RQELVNTMTKEAIEEVESKYLSDESNRVLIIAKEGWNAGVIGIVASRLVEKYYRPTIVMSIDREKGVAKGSARSIEAFDM
FANLSECRDILPHFGGHPMAAGMTIDLSYLEDLRSRLNEQALDKLTEEDLTPLTKVDLHCRVEDVTLETIEEMNLLAPFG
VSNPKPVVMLKDVHLSQIRRIGSQDNHLKVGLEENGATLDGVGFHFGYAFEEIASRAAVSVIGQLSVNEWNGLRKPQIFV
KDIAVNEWQLFDYRGIRDLKKRLEMLPLDKLVMVAFQKNTMTKLGLENWKDYIIVDPTEQEKLAIENKYVMLLDLPDLEE
DLVNLFRKGGLPDRTYAVFEHEEDHFFSTLPSREDFKWFYAFLMKRGSFNLRDAEKLAKHKGWSKETVPFMSEVFFELDF
VTMDNGLISLNPQSVKSELTSSKTYRSKLEKAKLENDFCYSSYHALKSWFDQSVNCFNSTEEAIK

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=830978 QL286_RS06880 WP_194219428.1 1440734..1443091(+) (recJ) [Pseudalkalibacillus hwajinpoensis strain MABIK MI00000821]
ATGTTAAGGTCTAAAACACGCTGGAAACTGGCTGAAACAGATGAAACAAACATTGATCGGCTCCAGAGTGAACTTGGAAT
TTCTCGACTTGCTGCTTCGCTTTTAGTTAATCGAGGTATTGAGGGAGAAGAAGAAGCGAAAAGATTTCTATATAAAGAGA
ATTTAACTTATCACGACCCATATTTAATGGATGGTATGAAGGAATCGGTCGAAAGAATTCAACAGGCGATTGCTTCTGGT
GAGCGAATCCTTATTTTTGGTGACTATGATGCCGATGGCGTTAGCAGCACGACTGTACTTGTCTATACGTTGCGCGAGCT
TGGCGCTATATTTGATTACTATATTCCTAATCGATTTACAGAGGGATACGGTCCGAACGAAGCTGCTTTTAGGCAGGCAA
AAGAAGATGGGTATCAACTAATAGTGACTGTAGATACAGGGATATCCGGTGTACATGAGGCGGAAGTTGCTAAAGAAATC
GGTATTGATCTCATTATTACTGATCATCATGAGCCTCCTCCGGTTCTGCCCGATTCCTACGCGACAATAAACCCTAAAAA
GCCAGGGTGTGGTTATCCATTCAAAGGTTTAGCAGGAGTAGGGGTTGCATTTAAACTTGCGCAGGCTTTGCTTGGAAGAA
TTCCAGGGGATTTATTAGAGATCGCCGCAATGGGTACCATCGCTGATCTTGTGCCACTTCAGGATGAGAACCGTCTTTTA
GCAAGCGAAGGTATTCGCGCCCTTCAAAATTCAAATAAGCCAGGAATAAAAGCTTTGCTAGATGTATGTGGTTTAAAGGG
TCAGGAGCTTAACGAAGAGCATCTTGGTTTTGGGATAGGACCGAGACTAAATGCTGCGGGCCGTCTTGATAGTGCAGACC
CAGCAGTTGAACTGCTGACAACAGATGATCCGATTCTTGCTGAACAGCTGGCATCTGATATTGATGCTCTTAATAAGAAT
CGTCAGGAACTAGTTAATACAATGACGAAAGAAGCGATTGAAGAGGTTGAGTCAAAGTACTTGAGTGATGAAAGCAATCG
TGTACTCATCATTGCGAAGGAAGGATGGAATGCGGGGGTCATTGGAATCGTGGCTTCACGACTTGTTGAAAAGTATTATC
GCCCAACCATCGTGATGAGTATTGATCGTGAGAAAGGTGTCGCAAAAGGATCTGCACGAAGTATTGAGGCCTTTGATATG
TTTGCAAACCTTTCTGAGTGCAGAGACATTCTCCCTCACTTCGGTGGTCATCCAATGGCCGCTGGTATGACCATTGATTT
AAGCTACCTAGAAGATTTGCGTTCAAGATTAAACGAACAGGCTTTAGATAAGTTAACAGAAGAAGATTTGACGCCACTTA
CAAAAGTAGATCTTCACTGTCGTGTAGAGGATGTTACTCTTGAGACAATTGAAGAAATGAATCTTTTGGCTCCTTTTGGA
GTAAGTAATCCGAAACCAGTCGTTATGCTAAAAGACGTTCATCTCTCTCAAATCAGAAGGATTGGGAGTCAGGACAATCA
CCTCAAGGTAGGTCTTGAGGAAAACGGCGCTACGCTAGATGGCGTAGGGTTTCATTTCGGTTATGCATTTGAAGAAATAG
CATCAAGAGCTGCTGTAAGCGTAATTGGCCAACTCTCCGTCAACGAGTGGAATGGACTTCGAAAGCCACAAATCTTTGTG
AAAGATATCGCTGTGAATGAATGGCAGCTCTTTGATTATCGAGGCATTCGAGATTTGAAAAAACGACTTGAAATGCTGCC
GCTCGATAAGCTTGTTATGGTAGCTTTCCAAAAAAACACCATGACAAAGCTTGGACTTGAGAATTGGAAAGATTACATTA
TTGTTGATCCAACAGAACAAGAGAAACTAGCAATTGAGAATAAATATGTTATGCTACTCGATCTTCCGGATTTAGAGGAA
GATCTTGTCAATCTGTTTCGAAAAGGTGGATTACCAGATCGAACGTATGCGGTATTTGAGCATGAGGAGGATCACTTTTT
CTCAACGCTTCCGTCACGTGAGGATTTTAAATGGTTCTATGCTTTCTTAATGAAGAGAGGTAGCTTTAACTTACGCGATG
CTGAAAAGCTCGCAAAGCATAAAGGTTGGTCAAAAGAAACAGTTCCGTTTATGTCAGAGGTGTTTTTTGAGCTAGATTTT
GTTACAATGGATAATGGACTGATTTCTCTAAATCCACAATCTGTAAAAAGTGAATTAACTTCTTCTAAAACGTATAGGAG
TAAGCTTGAAAAAGCAAAGCTCGAAAATGATTTTTGCTATTCCTCCTATCATGCTTTGAAAAGTTGGTTCGATCAATCAG
TTAATTGTTTCAATAGCACTGAGGAGGCCATTAAGTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-440)

RecJ OB domain (RecJ_OB)

(456-562)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-770)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

51.484

98.726

0.508