Detailed information NTG0083080

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: H7680_RS08975
• Genome accession: NZ_AP023394
• Coordinates: 1832761..1833693 (-)
• Length: 310 a.a.
• NCBI ID: WP_138128167.1
• Uniprot ID: -
• Organism: Streptococcus dysgalactiae subsp. equisimilis strain 159
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1827761..1838693

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7680_RS08950 (SDSE159_17490)	tsaD	1828251..1829267 (-)	1017	WP_003056674.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
H7680_RS08955 (SDSE159_17500)	rimI	1829257..1829682 (-)	426	WP_003056684.1	ribosomal protein S18-alanine N-acetyltransferase	-
H7680_RS08960 (SDSE159_17510)	tsaB	1829684..1830382 (-)	699	WP_003062223.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
H7680_RS08965 (SDSE159_17520)	-	1830668..1830898 (+)	231	WP_003056704.1	DNA-dependent RNA polymerase subunit epsilon	-
H7680_RS08970 (SDSE159_17530)	rnjA	1830900..1832582 (+)	1683	WP_003056700.1	ribonuclease J1	-
H7680_RS08975 (SDSE159_17540)	amiF	1832761..1833693 (-)	933	WP_138128167.1	ATP-binding cassette domain-containing protein	Regulator
H7680_RS08980 (SDSE159_17550)	oppD	1833686..1834738 (-)	1053	WP_003058019.1	ABC transporter ATP-binding protein	Regulator
H7680_RS08985 (SDSE159_17560)	-	1834750..1835781 (-)	1032	WP_184006723.1	ABC transporter permease	-
H7680_RS08990 (SDSE159_17570)	-	1835791..1836705 (-)	915	WP_003052794.1	ABC transporter permease	-
H7680_RS08995 (SDSE159_17580)	-	1836973..1838628 (-)	1656	WP_003058031.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 310 a.a.
• Molecular weight: 35153.95 Da
• Isoelectric Point: 6.6437

>NTDB_id=83080 H7680_RS08975 WP_138128167.1 1832761..1833693(-) (amiF) [Streptococcus dysgalactiae subsp. equisimilis strain 159]
MNDNRKKLVELKNVSLTFNKGKKNEVKAIDNVSFDINEGEVFGLVGESGSGKTTVGRAILKLYDINEGEIIFNGETVSHL
KGKDLRTFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREERVQELLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQKLQHKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNHPIHPYTKSLLSAIPEPDPDKERQRVADVYDPSQELDGQERQMHEITPGHFVLATQEEADQYRREYH

Nucleotide

• Length: 933 bp

>NTDB_id=83080 H7680_RS08975 WP_138128167.1 1832761..1833693(-) (amiF) [Streptococcus dysgalactiae subsp. equisimilis strain 159]
ATGAATGATAATCGAAAGAAATTAGTAGAGTTAAAAAATGTCTCCTTAACTTTCAATAAGGGAAAGAAAAACGAAGTCAA
AGCCATTGATAATGTGAGCTTTGATATTAATGAAGGGGAAGTGTTTGGACTGGTTGGGGAATCCGGATCAGGAAAAACAA
CTGTTGGTCGCGCCATTTTAAAGCTTTATGATATTAATGAAGGGGAAATTATTTTTAATGGTGAAACCGTTTCTCATTTG
AAAGGGAAAGACTTGCGGACCTTTCGTAAGGATGCTCAGATGATTTTCCAAGATCCTCAGGCTAGTCTTAACGGCCGTAT
GAAAATCAGAGATATTGTGGCAGAAGGGCTAGATATTCATGGACTCACAGCTTCAAAGGCAGAACGAGAAGAACGCGTGC
AAGAACTCCTTGATTTGGTTGGGTTGAACAAGGACCATTTGACACGTTACCCCCATGAATTTTCTGGTGGTCAACGTCAA
CGGATTGGGATTGCCCGTGCTTTGGCAGTTAAACCTAAATTTATCATTGCTGATGAACCTATCTCAGCTCTCGATGTGTC
GATTCAGGCCCAGGTAGTTAACTTGATGCAAAAGCTTCAGCACAAACGTGGATTGACCTATCTTTTTATTGCCCATGACT
TGTCAATGGTCAAATACATTTCTGACCGTATCGGAGTCATGCACTGGGGTAAAATGTTGGAGATTGGGACCTCAGATGAT
GTCTATAATCATCCTATTCATCCTTATACCAAGAGCCTACTCTCGGCTATTCCTGAACCAGATCCAGACAAAGAACGTCA
GCGGGTGGCTGATGTATATGATCCAAGTCAAGAATTGGACGGCCAAGAACGTCAGATGCATGAGATTACGCCAGGCCATT
TTGTCTTAGCTACCCAAGAAGAAGCAGACCAATATCGACGGGAGTATCATTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-268)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.426	98.387	0.535
amiF	Streptococcus thermophilus LMG 18311	54.098	98.387	0.532
amiF	Streptococcus salivarius strain HSISS4	53.77	98.387	0.529