Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QLX50_RS08135 Genome accession   NZ_CP125283
Coordinates   1610915..1611694 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain IFST-221     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1605915..1616694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLX50_RS08115 (QLX50_08115) trmFO 1606602..1607909 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QLX50_RS08120 (QLX50_08120) xerC 1607979..1608896 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  QLX50_RS08125 (QLX50_08125) hslV 1608912..1609457 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  QLX50_RS08130 (QLX50_08130) hslU 1609465..1610877 (+) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  QLX50_RS08135 (QLX50_08135) codY 1610915..1611694 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QLX50_RS08140 (QLX50_08140) flgB 1612048..1612437 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  QLX50_RS08145 (QLX50_08145) flgC 1612437..1612889 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  QLX50_RS08150 (QLX50_08150) fliE 1612900..1613220 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  QLX50_RS08155 (QLX50_08155) fliF 1613263..1614873 (+) 1611 WP_044801427.1 flagellar basal-body MS-ring/collar protein FliF -
  QLX50_RS08160 (QLX50_08160) fliG 1614886..1615902 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  QLX50_RS08165 (QLX50_08165) fliH 1615895..1616650 (+) 756 WP_044801428.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=830609 QLX50_RS08135 WP_003154263.1 1610915..1611694(+) (codY) [Bacillus velezensis strain IFST-221]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=830609 QLX50_RS08135 WP_003154263.1 1610915..1611694(+) (codY) [Bacillus velezensis strain IFST-221]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCAGGCTTAACAACGATCGTGCCGATCATTGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471