Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   R3F76_RS19980 Genome accession   NZ_CP139647
Coordinates   4096902..4097954 (+) Length   350 a.a.
NCBI ID   WP_039147921.1    Uniprot ID   -
Organism   Bradyrhizobium japonicum strain CNPSo 23     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4091902..4102954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3F76_RS19960 (R3F76_19960) - 4092541..4094130 (+) 1590 WP_028170233.1 ABC transporter substrate-binding protein -
  R3F76_RS19965 (R3F76_19965) - 4094191..4095114 (+) 924 WP_014494877.1 ABC transporter permease -
  R3F76_RS19970 (R3F76_19970) - 4095111..4095932 (+) 822 WP_038936568.1 ABC transporter permease -
  R3F76_RS19975 (R3F76_19975) - 4095929..4096909 (+) 981 WP_039147918.1 ABC transporter ATP-binding protein -
  R3F76_RS19980 (R3F76_19980) amiE 4096902..4097954 (+) 1053 WP_039147921.1 ABC transporter ATP-binding protein Regulator
  R3F76_RS19985 (R3F76_19985) - 4098162..4098380 (+) 219 WP_038958760.1 hypothetical protein -
  R3F76_RS19990 (R3F76_19990) - 4099284..4099502 (-) 219 WP_051664569.1 methyltransferase family protein -
  R3F76_RS19995 (R3F76_19995) - 4099769..4101511 (-) 1743 WP_039147927.1 adenylate/guanylate cyclase domain-containing protein -
  R3F76_RS20000 (R3F76_20000) - 4101887..4102633 (+) 747 WP_028170235.1 C13 family peptidase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38529.95 Da        Isoelectric Point: 6.8171

>NTDB_id=830576 R3F76_RS19980 WP_039147921.1 4096902..4097954(+) (amiE) [Bradyrhizobium japonicum strain CNPSo 23]
MHEPQDMRGEARSDDDLILSIEDLAVHFPMGGGLLGRSRRVLRAVDGVDLSLRRGECLGLVGESGSGKSTVALSILGLLT
PTRGRIVLDGQVVTNRQSGDRKSLARTVQIVFQDPYASLNPRQTVRRTLEDPLRVHGVTEKSEIEDRVATMLRHVGLRPE
QADRYPHEFSGGQRQRIGIARALILNPRIVICDEPVSALDVSIRAQIINLLLELKDTLGLSYIMISHDLGVVEHMSDRVA
VMYLGRIVENGHWREIFERPAHPYTQALIAAIPDPLRHAPLATTGGDLPNPLNPPNGCAFSPRCRYAEAVCRHEPGPVLE
TRADGHEVRCWRADEIAGQTQLASTEGGHP

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=830576 R3F76_RS19980 WP_039147921.1 4096902..4097954(+) (amiE) [Bradyrhizobium japonicum strain CNPSo 23]
ATGCATGAGCCGCAAGACATGCGGGGTGAAGCGAGGTCGGACGACGATCTCATTCTCAGCATCGAGGATCTCGCGGTTCA
TTTTCCGATGGGGGGCGGCCTGCTGGGCCGCAGCCGGCGGGTGCTCCGTGCCGTCGACGGTGTCGATCTCAGCCTGAGAC
GGGGCGAATGCCTCGGCCTCGTCGGCGAGTCCGGCTCGGGCAAGTCGACCGTCGCATTGTCGATCCTGGGGCTCCTGACG
CCGACGCGCGGCCGTATCGTGCTGGACGGGCAGGTGGTGACGAACAGGCAGTCCGGCGACCGAAAGTCGCTGGCCCGCAC
CGTGCAGATCGTCTTTCAGGATCCCTACGCCTCGCTCAACCCACGCCAGACCGTCCGCCGCACGCTGGAAGATCCCCTGC
GTGTGCATGGCGTGACCGAGAAAAGCGAGATCGAGGACCGTGTTGCGACGATGCTGCGGCATGTCGGCCTGCGGCCGGAA
CAGGCCGACCGCTATCCGCACGAATTCTCCGGTGGCCAGCGCCAGCGCATCGGGATTGCGCGCGCCCTGATCCTCAATCC
CAGGATCGTCATCTGCGACGAGCCGGTATCGGCGCTCGACGTCTCGATCCGCGCCCAGATCATCAATTTGCTGCTGGAAT
TGAAGGACACGCTCGGTCTCTCCTACATCATGATCAGCCACGACCTCGGCGTCGTCGAGCACATGAGCGACCGCGTCGCC
GTCATGTATCTCGGCCGCATCGTCGAGAACGGCCACTGGCGCGAAATTTTTGAGCGCCCGGCGCACCCCTATACGCAAGC
CCTGATCGCGGCCATCCCCGATCCGCTGCGTCATGCGCCGTTGGCGACGACAGGCGGCGACCTTCCCAACCCGCTCAATC
CGCCGAACGGATGCGCCTTCAGCCCGCGTTGCCGGTACGCGGAGGCCGTGTGTCGTCACGAGCCCGGTCCGGTGCTGGAA
ACGCGCGCCGATGGACATGAGGTGAGGTGCTGGCGGGCGGACGAGATTGCGGGGCAGACGCAATTGGCTTCGACCGAGGG
CGGGCATCCCTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(46-196)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(248-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

37.685

96.286

0.363