Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   R6Z04_RS06330 Genome accession   NZ_CP139440
Coordinates   1222196..1223113 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain GUCC4     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1217196..1228113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Z04_RS06315 (R6Z04_06315) trpS 1217776..1218768 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  R6Z04_RS06320 (R6Z04_06320) oppA 1219512..1221149 (+) 1638 WP_003232957.1 oligopeptide ABC transporter substrate-binding protein OppA -
  R6Z04_RS06325 (R6Z04_06325) oppB 1221257..1222192 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  R6Z04_RS06330 (R6Z04_06330) amiD 1222196..1223113 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  R6Z04_RS06335 (R6Z04_06335) oppD 1223118..1224194 (+) 1077 WP_014906294.1 oligopeptide ABC transporter ATP-binding protein OppD -
  R6Z04_RS06340 (R6Z04_06340) oppF 1224196..1225113 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  R6Z04_RS06345 (R6Z04_06345) yjbB 1225220..1226437 (+) 1218 WP_010886478.1 MFS transporter -
  R6Z04_RS06350 (R6Z04_06350) yjbC 1226601..1227179 (+) 579 WP_003244921.1 GNAT family N-acetyltransferase -
  R6Z04_RS06355 (R6Z04_06355) spx 1227360..1227755 (+) 396 WP_003245483.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=830446 R6Z04_RS06330 WP_003232954.1 1222196..1223113(+) (amiD) [Bacillus subtilis strain GUCC4]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=830446 R6Z04_RS06330 WP_003232954.1 1222196..1223113(+) (amiD) [Bacillus subtilis strain GUCC4]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGAA
GAACAGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTATTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364