Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   SPM78_RS30175 Genome accession   NZ_CP139424
Coordinates   6427554..6428279 (-) Length   241 a.a.
NCBI ID   WP_004365178.1    Uniprot ID   A0A0H2ZL31
Organism   Pseudomonas aeruginosa strain 136790     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6422554..6433279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPM78_RS30145 (SPM78_30145) - 6423434..6424571 (+) 1138 Protein_5964 hypothetical protein -
  SPM78_RS30150 (SPM78_30150) - 6424568..6424855 (+) 288 WP_010791802.1 hypothetical protein -
  SPM78_RS30155 (SPM78_30155) - 6424929..6425153 (+) 225 WP_003121473.1 hypothetical protein -
  SPM78_RS30160 (SPM78_30160) - 6425330..6426304 (-) 975 WP_023095128.1 serine/threonine protein kinase -
  SPM78_RS30165 (SPM78_30165) - 6426366..6427124 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  SPM78_RS30170 (SPM78_30170) - 6427192..6427512 (-) 321 WP_004365177.1 YfiM family lipoprotein -
  SPM78_RS30175 (SPM78_30175) comF 6427554..6428279 (-) 726 WP_004365178.1 ComF family protein Machinery gene
  SPM78_RS30180 (SPM78_30180) - 6428418..6428711 (-) 294 WP_003084806.1 hypothetical protein -
  SPM78_RS30185 (SPM78_30185) - 6428765..6429691 (-) 927 WP_023874849.1 LysR family transcriptional regulator -
  SPM78_RS30190 (SPM78_30190) - 6429809..6430567 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  SPM78_RS30195 (SPM78_30195) - 6430644..6430892 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  SPM78_RS30200 (SPM78_30200) - 6430903..6432279 (+) 1377 WP_023095130.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  SPM78_RS30205 (SPM78_30205) - 6432281..6433159 (+) 879 WP_023095131.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27019.49 Da        Isoelectric Point: 11.0325

>NTDB_id=830389 SPM78_RS30175 WP_004365178.1 6427554..6428279(-) (comF) [Pseudomonas aeruginosa strain 136790]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRSDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAECLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=830389 SPM78_RS30175 WP_004365178.1 6427554..6428279(-) (comF) [Pseudomonas aeruginosa strain 136790]
ATGTCATTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCTTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGGCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCCGGCGAGCTGGACCTGCGCAGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACGCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGTGCCTTTCCCGTCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Double zinc ribbon domain (DZR_2)

(9-65)

Phosphoribosyl transferase domain (Pribosyltran)

(137-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZL31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382