Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SIS06_RS06515 Genome accession   NZ_CP139188
Coordinates   1230182..1231099 (+) Length   305 a.a.
NCBI ID   WP_187002182.1    Uniprot ID   -
Organism   Bacillus subtilis strain H17-16     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1225182..1236099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIS06_RS06500 (SIS06_06500) trpS 1225763..1226755 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  SIS06_RS06505 (SIS06_06505) oppA 1227499..1229136 (+) 1638 WP_021479550.1 oligopeptide ABC transporter substrate-binding protein OppA -
  SIS06_RS06510 (SIS06_06510) oppB 1229243..1230178 (+) 936 WP_014479444.1 oligopeptide ABC transporter permease OppB -
  SIS06_RS06515 (SIS06_06515) amiD 1230182..1231099 (+) 918 WP_187002182.1 oligopeptide ABC transporter permease OppC Regulator
  SIS06_RS06520 (SIS06_06520) oppD 1231104..1232180 (+) 1077 WP_015252358.1 oligopeptide ABC transporter ATP-binding protein OppD -
  SIS06_RS06525 (SIS06_06525) oppF 1232182..1233099 (+) 918 WP_003239287.1 oligopeptide ABC transporter ATP-binding protein OppF -
  SIS06_RS06530 (SIS06_06530) yjbB 1233206..1234423 (+) 1218 WP_283934460.1 MFS transporter -
  SIS06_RS06535 (SIS06_06535) yjbC 1234587..1235165 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  SIS06_RS06540 (SIS06_06540) spx 1235346..1235741 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33653.18 Da        Isoelectric Point: 10.2873

>NTDB_id=829790 SIS06_RS06515 WP_187002182.1 1230182..1231099(+) (amiD) [Bacillus subtilis strain H17-16]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIMLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=829790 SIS06_RS06515 WP_187002182.1 1230182..1231099(+) (amiD) [Bacillus subtilis strain H17-16]
ATGCAGAACATTCCGAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCATGCTCATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCCGCTGTTCTTGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364