Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SJH97_RS25835 Genome accession   NZ_CP139175
Coordinates   5569867..5571237 (+) Length   456 a.a.
NCBI ID   WP_320587074.1    Uniprot ID   -
Organism   Streptomyces sp. CL7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5564867..5576237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJH97_RS25810 (SJH97_25810) - 5565150..5565557 (+) 408 WP_320587069.1 VOC family protein -
  SJH97_RS25815 (SJH97_25815) - 5565634..5566644 (+) 1011 WP_320587070.1 methyltransferase -
  SJH97_RS25820 (SJH97_25820) - 5566720..5567205 (+) 486 WP_320587071.1 DUF488 family protein -
  SJH97_RS25825 (SJH97_25825) - 5567202..5568878 (+) 1677 WP_320587072.1 asparaginase domain-containing protein -
  SJH97_RS25830 (SJH97_25830) - 5568894..5569745 (+) 852 WP_320587073.1 PhzF family phenazine biosynthesis protein -
  SJH97_RS25835 (SJH97_25835) rarA 5569867..5571237 (+) 1371 WP_320587074.1 replication-associated recombination protein A Machinery gene
  SJH97_RS25840 (SJH97_25840) - 5571393..5571788 (-) 396 WP_320587075.1 RidA family protein -
  SJH97_RS25845 (SJH97_25845) - 5571926..5572900 (+) 975 WP_320587076.1 helix-turn-helix transcriptional regulator -
  SJH97_RS25850 (SJH97_25850) - 5573145..5573348 (+) 204 WP_320587077.1 cold-shock protein -
  SJH97_RS34975 - 5573602..5573793 (+) 192 Protein_5090 hypothetical protein -
  SJH97_RS25855 (SJH97_25855) - 5573790..5575475 (+) 1686 WP_320587078.1 ribonuclease J -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48605.27 Da        Isoelectric Point: 7.4331

>NTDB_id=829575 SJH97_RS25835 WP_320587074.1 5569867..5571237(+) (rarA) [Streptomyces sp. CL7]
MTADDGLFALPEADHTPPGPPPAPAGARADAPLAVRMRPRSLTEVVGQAHLLHPGAPLRRLAEGGEAASVLLYGPPGTGK
TTLARLMAAVAARRFVALSALTSGVKELRDVMNEARRHRDGQGRRTVLFIDEVHRFSKTQQDALLGAVEDGLVLLVAATT
ENPSFSVVSPLLSRLLVQQLQPLGEDDVRELLRRAVQDERGLGGAVSVTPEAEDALVRLAAGDARSAMTALEASADGVTG
TGGTVVDVPAVERAVAEATVRYDRQGDQHHDVVSAFIKSIRGSDPDAALHYLARMLVAGEDPRFIARRLVVHASEDVGLA
DPTALQTAVAAARTVQLIGMPEARLALAQATVHLAMAPKSNAVIVGIDEAMSDVRAGAVGEIPAHLRHSRYTGARELGNG
IGYRYPHRVPEGVLAQQYPPGGLVGKDYYRPTRHGGERDLRERLTRLRRVVRGEER

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=829575 SJH97_RS25835 WP_320587074.1 5569867..5571237(+) (rarA) [Streptomyces sp. CL7]
ATGACGGCCGACGACGGTCTCTTCGCGTTACCGGAAGCGGACCACACTCCGCCGGGCCCGCCGCCGGCGCCGGCCGGGGC
ACGGGCCGACGCCCCGCTCGCCGTGCGGATGCGGCCGAGATCGCTCACCGAGGTCGTCGGCCAGGCCCACCTGCTGCACC
CCGGCGCCCCCCTGCGGCGGCTGGCCGAGGGCGGCGAGGCGGCGTCGGTACTGCTGTACGGCCCGCCGGGCACGGGGAAG
ACCACACTGGCGCGCCTGATGGCCGCCGTCGCCGCCCGCCGGTTCGTCGCCCTCTCGGCGCTGACCAGCGGCGTCAAGGA
ACTGCGTGACGTGATGAACGAGGCGCGCCGTCACCGCGACGGACAGGGCCGGCGGACCGTCCTGTTCATCGACGAGGTGC
ACCGCTTCTCCAAGACCCAGCAGGACGCGCTGCTCGGAGCGGTCGAGGACGGGCTGGTCCTGCTCGTCGCGGCCACCACG
GAGAACCCGTCGTTCTCCGTGGTGTCCCCGCTCCTCTCCCGCCTCTTGGTACAGCAGCTTCAGCCCTTGGGCGAGGACGA
CGTCCGCGAGCTGCTGCGCCGGGCGGTGCAGGACGAGCGCGGCCTCGGCGGCGCGGTCTCCGTGACGCCGGAGGCCGAGG
ACGCCCTGGTGCGCCTCGCGGCCGGTGACGCCCGGAGCGCCATGACCGCACTGGAGGCGAGCGCCGACGGGGTGACGGGC
ACCGGCGGCACCGTGGTCGACGTCCCGGCGGTGGAGCGCGCCGTCGCCGAGGCCACGGTGCGCTACGACCGGCAGGGCGA
CCAGCACCACGACGTCGTCAGCGCGTTCATCAAGTCGATCCGCGGCTCGGACCCCGACGCGGCGCTGCACTACCTGGCCC
GCATGCTCGTCGCCGGCGAGGACCCGCGCTTCATCGCGAGGCGCTTGGTGGTGCACGCGAGCGAGGACGTCGGACTGGCC
GACCCCACGGCTCTCCAGACCGCCGTCGCCGCGGCCCGGACGGTCCAGCTCATCGGCATGCCCGAGGCTCGCCTGGCCCT
GGCCCAGGCCACTGTGCACCTGGCCATGGCACCGAAGTCGAACGCGGTGATCGTCGGGATCGACGAGGCCATGTCCGACG
TCCGGGCGGGCGCCGTCGGCGAGATCCCCGCGCATCTGCGCCACAGCCGCTACACGGGCGCCAGGGAACTGGGCAACGGG
ATCGGCTACCGCTACCCGCACAGGGTCCCCGAGGGAGTGCTGGCGCAGCAGTACCCGCCGGGCGGCCTCGTGGGGAAGGA
CTACTACCGCCCCACGCGGCACGGTGGGGAGCGTGACCTGCGGGAGCGCCTCACCAGGCTCCGCCGTGTCGTCCGGGGCG
AGGAGCGGTAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(205-281)

ATPase family associated with various cellular activities (AAA) (AAA)

(70-178)

MgsA AAA+ ATPase C terminal (MgsA_C)

(282-447)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

41.135

92.763

0.382