Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SKB18_RS05890 Genome accession   NZ_CP139163
Coordinates   1192069..1193355 (-) Length   428 a.a.
NCBI ID   WP_014636735.1    Uniprot ID   -
Organism   Streptococcus suis strain cnzyss2-311     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1187069..1198355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SKB18_RS05860 - 1188867..1189001 (+) 135 WP_002939130.1 hypothetical protein -
  SKB18_RS05865 - 1189003..1190349 (+) 1347 WP_014636737.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  SKB18_RS05870 - 1190351..1190845 (+) 495 WP_014636736.1 GNAT family N-acetyltransferase -
  SKB18_RS05875 nrdG 1191032..1191589 (+) 558 WP_012027991.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  SKB18_RS05890 rarA 1192069..1193355 (-) 1287 WP_014636735.1 replication-associated recombination protein A Machinery gene
  SKB18_RS05895 - 1193429..1193899 (+) 471 WP_014636734.1 DUF3013 family protein -
  SKB18_RS05900 - 1193901..1194254 (+) 354 WP_014636733.1 ASCH domain-containing protein -
  SKB18_RS05905 prmA 1194851..1195804 (+) 954 WP_014636731.1 50S ribosomal protein L11 methyltransferase -
  SKB18_RS05910 - 1195806..1196552 (+) 747 WP_014636730.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  SKB18_RS05915 - 1196557..1197273 (+) 717 WP_014636729.1 DUF554 domain-containing protein -
  SKB18_RS05920 - 1197514..1198071 (+) 558 WP_014636728.1 hypothetical protein -

Sequence

Protein


Download         Length: 428 a.a.        Molecular weight: 47389.99 Da        Isoelectric Point: 6.2932

>NTDB_id=829478 SKB18_RS05890 WP_014636735.1 1192069..1193355(-) (rarA) [Streptococcus suis strain cnzyss2-311]
MPANLALRMRPKSIDEVIGQEHLVGPGKIIRRMIDANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATTDNQKRL
QEIAEEAKFSGGLVLMLDEIHRLNKTKQDFLLPLLENGNIIMIGATTENPFFSILPAIRSRVQIFELQPLQTSHIRQALE
LALTDSERGFDFPITIEPEALDFLANATNGDLRAAYNSLELAVLSTKESDDGSRHIDLDAVENSLQKSYISMDKNGDAHY
DILSALQKSIRGSDVNASLHYAARLIEAEDLPSLARRLMVIAYEDIGLANPEAQIHTVTALEAAQKIGFPEARILIANVV
VDLALSPKSNSAYQAMDAALADLRKNGHLPIPNHLRDGHYAGSKELGNAIGYQYPHAYPEKWVDQQYLPDKLLNADYFTA
NDTGKYERALGMTQEKIKNLKKNRRQNP

Nucleotide


Download         Length: 1287 bp        

>NTDB_id=829478 SKB18_RS05890 WP_014636735.1 1192069..1193355(-) (rarA) [Streptococcus suis strain cnzyss2-311]
ATGCCAGCCAATCTCGCCCTTCGTATGCGGCCCAAATCCATTGATGAAGTCATCGGTCAGGAACACCTGGTCGGTCCTGG
AAAGATTATCCGCCGCATGATTGATGCCAATATGCTGTCGTCCATGATTCTCTACGGTCCGCCTGGGATTGGCAAAACCT
CGATTGCGTCCGCCATTGCTGGTACGACCAAGTATGCCTTTCGGACCTTTAATGCCACGACCGACAACCAAAAACGCCTG
CAGGAAATCGCTGAAGAGGCCAAGTTTTCTGGCGGTCTGGTCCTCATGCTCGATGAAATCCACCGTCTCAACAAGACCAA
GCAAGACTTCCTGCTTCCTCTCTTGGAAAATGGCAATATCATCATGATTGGGGCAACGACGGAAAATCCCTTCTTCTCAA
TTCTGCCTGCCATTCGCAGTCGAGTGCAGATTTTTGAATTACAACCTTTGCAAACCAGCCACATCCGACAGGCCTTGGAA
CTGGCTCTGACAGACAGTGAACGTGGTTTTGACTTCCCCATTACCATTGAGCCTGAGGCTCTGGATTTCCTAGCCAACGC
CACCAACGGTGACCTACGTGCTGCTTACAATTCGCTAGAATTAGCTGTGCTTTCGACCAAGGAAAGTGATGACGGTAGCC
GCCACATTGATCTGGACGCCGTGGAAAATAGCCTGCAAAAGTCCTACATCAGCATGGACAAGAACGGCGATGCCCACTAC
GACATCCTCTCGGCTCTGCAAAAATCCATTCGGGGTAGCGATGTCAATGCCAGCCTCCACTACGCCGCCCGTTTGATTGA
GGCGGAAGACCTGCCTAGTCTGGCCCGTCGCTTGATGGTCATTGCCTACGAAGACATCGGCTTGGCCAATCCAGAGGCTC
AGATTCATACGGTGACGGCCCTTGAAGCTGCCCAGAAAATCGGCTTTCCAGAAGCACGGATTTTGATTGCCAATGTGGTA
GTCGATTTGGCTCTTTCTCCCAAGTCCAATTCTGCCTATCAGGCTATGGATGCAGCTCTGGCTGATTTGCGGAAAAACGG
TCATCTGCCTATTCCAAATCACCTGCGGGACGGCCATTATGCTGGTAGTAAGGAGCTGGGAAATGCTATTGGCTACCAGT
ATCCGCATGCCTATCCTGAAAAATGGGTGGACCAGCAATACCTGCCCGATAAGTTACTGAATGCGGACTACTTCACCGCC
AACGACACCGGCAAATACGAGCGTGCCTTGGGTATGACCCAAGAAAAGATAAAAAATTTGAAAAAAAATAGACGCCAAAA
TCCTTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.33

97.664

0.579