Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   R8611_RS06040 Genome accession   NZ_AP026927
Coordinates   1190308..1192056 (-) Length   582 a.a.
NCBI ID   WP_050221894.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700178     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1185308..1197056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8611_RS05995 (PC0174_11800) - 1185447..1186034 (-) 588 WP_000821279.1 CPBP family intramembrane glutamic endopeptidase -
  R8611_RS10775 (PC0174_11810) - 1186127..1186270 (-) 144 WP_000840766.1 hypothetical protein -
  R8611_RS06005 (PC0174_11820) - 1186283..1186663 (-) 381 WP_000566531.1 arsenate reductase family protein -
  R8611_RS06010 (PC0174_11830) - 1186656..1186994 (-) 339 Protein_1192 hypothetical protein -
  R8611_RS06015 (PC0174_11840) - 1186990..1187241 (-) 252 Protein_1193 replication initiator protein A -
  R8611_RS06020 (PC0174_11850) - 1187241..1187411 (-) 171 WP_001168348.1 hypothetical protein -
  R8611_RS06025 (PC0174_11860) rplL 1187598..1187966 (-) 369 WP_001196960.1 50S ribosomal protein L7/L12 -
  R8611_RS06030 (PC0174_11870) rplJ 1188042..1188542 (-) 501 WP_001287278.1 50S ribosomal protein L10 -
  R8611_RS06035 (PC0174_11880) - 1188792..1190051 (-) 1260 WP_001818502.1 TRZ/ATZ family protein -
  R8611_RS06040 (PC0174_11890) rcrQ 1190308..1192056 (-) 1749 WP_050221894.1 ABC transporter ATP-binding protein Regulator
  R8611_RS06045 (PC0174_11900) - 1192058..1193782 (-) 1725 WP_050199795.1 ABC transporter ATP-binding protein -
  R8611_RS06050 (PC0174_11910) msrB 1193840..1194778 (-) 939 WP_000818207.1 peptide-methionine (R)-S-oxide reductase MsrB -
  R8611_RS06055 (PC0174_11920) thrB 1195028..1195897 (-) 870 WP_000692438.1 homoserine kinase -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 64887.48 Da        Isoelectric Point: 8.0734

>NTDB_id=82936 R8611_RS06040 WP_050221894.1 1190308..1192056(-) (rcrQ) [Streptococcus pneumoniae strain PZ900700178]
MKRQTVNQTLKRLVVDLANHPFLLFLAFLGTIAQVGLSIYLPILIGQVIDQVLVAGSSPVFWQIFLQMLLVVIGNTLVQW
ANPLLYNRLIFSYTRDLRERIIHKLHRLPIAFVDRQGSGEMVSRVTTDIEQLAAGLTMIFNQFFIGVLMILVSILAMLQI
HLLMTLLVLLLTPLSMVISRFIAKRSYHLFQKQTETRGIQTQLIEESLSQQTIIQSFNAQTEFIQRLREAHDNYSGYSQS
AIFYSSTVNPSTRFVNALIYALLAGVGAYRIMMGSTLTVGRLVTFLNYVQQYTKPFNDISSVLAELQSALACVERIYGVL
DSPEVAETGKEVLTSDQVKGAISFKHVSFGYHPEKILIKDLSIDIPAGSKVAIVGPTGAGKSTLINLLMRFYPISSGDIL
LDGQSIYDYTRASLRQQFGMVLQETWLTQGTIHDNIAFGNPEASREQVIAAAKAANADFFIQQLPQGYDTKLKNAGESLS
VGQAQLLTIARVFLAIPKILILDEATSSIDTRTEVLVQDAFVKLMKGRTSFIIAHRLSTIQDADLILVLVDGDIVEYGNH
QELMDRKGKYYQMQKAAAFSSE

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=82936 R8611_RS06040 WP_050221894.1 1190308..1192056(-) (rcrQ) [Streptococcus pneumoniae strain PZ900700178]
ATGAAACGACAAACTGTAAACCAGACGCTCAAACGTTTAGTCGTAGATTTAGCAAACCATCCCTTCCTCCTTTTCCTAGC
CTTTCTAGGAACTATTGCCCAAGTTGGCTTATCAATTTACCTACCTATTCTGATTGGGCAGGTCATTGACCAAGTCCTAG
TGGCTGGTTCATCACCAGTTTTTTGGCAGATTTTTCTCCAGATGCTCTTGGTGGTAATAGGAAATACTCTGGTACAATGG
GCCAATCCTCTCCTCTATAATCGTCTAATCTTCTCTTATACCAGAGATTTACGGGAGCGAATCATCCATAAGCTCCATCG
TTTACCGATTGCCTTTGTAGATAGGCAAGGTAGTGGAGAGATGGTTAGTCGTGTAACCACGGACATCGAACAGTTGGCAG
CTGGCTTGACCATGATTTTTAACCAATTTTTCATTGGTGTTTTGATGATTTTGGTTAGTATTCTAGCCATGCTCCAAATT
CATCTCCTCATGACTCTCTTAGTCTTGCTGTTGACGCCACTGTCCATGGTGATTTCACGCTTTATTGCCAAGAGATCCTA
TCATCTCTTCCAGAAGCAAACAGAGACGAGGGGAATTCAGACTCAGTTGATTGAAGAATCGCTTAGCCAGCAGACTATAA
TCCAGTCCTTCAATGCTCAAACAGAATTTATCCAAAGATTGCGTGAGGCTCATGACAACTACTCAGGCTATTCTCAGTCA
GCCATCTTTTATTCTTCAACGGTCAATCCTTCGACTCGCTTTGTAAATGCACTCATTTATGCCCTTTTAGCTGGAGTAGG
AGCTTATCGTATCATGATGGGTTCAACCTTGACCGTCGGTCGTTTAGTGACTTTTTTGAACTATGTTCAGCAATACACCA
AGCCCTTTAACGATATTTCTTCAGTGCTAGCTGAGTTGCAAAGTGCTCTGGCTTGCGTAGAGCGTATCTATGGAGTCTTA
GATAGCCCTGAAGTGGCTGAAACAGGTAAGGAAGTCTTGACCAGTGACCAAGTTAAGGGAGCTATTTCCTTTAAACATGT
CTCTTTTGGCTACCATCCTGAAAAAATTTTGATTAAGGACTTGTCTATCGATATTCCAGCTGGTAGTAAGGTAGCCATCG
TTGGTCCGACAGGTGCTGGAAAATCAACTCTTATCAATCTCCTTATGCGTTTTTATCCCATTAGCTCGGGAGATATCTTG
CTGGATGGGCAATCCATTTATGATTATACACGAGCATCATTGAGACAGCAGTTTGGCATGGTGCTTCAAGAAACCTGGCT
CACACAAGGGACCATTCATGATAATATTGCCTTTGGCAATCCTGAAGCCAGTCGAGAGCAAGTAATTGCTGCTGCCAAAG
CAGCTAATGCAGACTTTTTCATCCAACAGTTGCCACAGGGATACGATACCAAGTTGAAAAATGCTGGAGAATCTCTCTCT
GTCGGCCAAGCTCAGCTCTTGACCATAGCCCGAGTCTTTCTGGCTATTCCAAAGATTCTTATCTTAGACGAGGCAACTTC
TTCCATTGATACACGGACAGAAGTGCTGGTACAGGATGCCTTTGTAAAACTCATGAAGGGCCGCACAAGTTTCATCATTG
CTCACCGTTTGTCAACCATTCAGGATGCGGATTTAATTCTTGTCTTAGTAGATGGTGATATTGTTGAATATGGTAACCAT
CAAGAACTCATGGATAGAAAGGGTAAGTATTACCAAATGCAAAAAGCTGCGGCTTTTAGTTCTGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(359-507)

ABC transporter transmembrane region (ABC_membrane)

(24-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

37.544

96.564

0.363

Multiple sequence alignment