Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   R9806_RS25025 Genome accession   NZ_CP139044
Coordinates   5821784..5824018 (+) Length   744 a.a.
NCBI ID   WP_320590924.1    Uniprot ID   -
Organism   Streptomyces sp. KN37     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5816784..5829018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9806_RS25000 (R9806_25000) - 5816837..5817880 (-) 1044 WP_223774734.1 LacI family DNA-binding transcriptional regulator -
  R9806_RS25005 (R9806_25005) - 5818078..5819229 (+) 1152 WP_223774733.1 Gfo/Idh/MocA family protein -
  R9806_RS25010 (R9806_25010) - 5819226..5820395 (+) 1170 WP_223774732.1 dihydrodipicolinate synthase family protein -
  R9806_RS25015 (R9806_25015) - 5820392..5821255 (+) 864 WP_320590923.1 sugar phosphate isomerase/epimerase family protein -
  R9806_RS25020 (R9806_25020) - 5821280..5821447 (-) 168 WP_223774730.1 DUF937 domain-containing protein -
  R9806_RS25025 (R9806_25025) recD/recD2/recDB 5821784..5824018 (+) 2235 WP_320590924.1 ATP-dependent RecD-like DNA helicase Machinery gene
  R9806_RS25030 (R9806_25030) - 5824224..5825522 (+) 1299 WP_223774728.1 citrate synthase -
  R9806_RS25035 (R9806_25035) - 5825931..5828210 (-) 2280 WP_320590925.1 heavy metal translocating P-type ATPase -
  R9806_RS25040 (R9806_25040) - 5828307..5828630 (-) 324 WP_223774726.1 heavy-metal-associated domain-containing protein -
  R9806_RS25045 (R9806_25045) - 5828765..5828962 (-) 198 WP_127912920.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 80174.85 Da        Isoelectric Point: 6.8897

>NTDB_id=829232 R9806_RS25025 WP_320590924.1 5821784..5824018(+) (recD/recD2/recDB) [Streptomyces sp. KN37]
MSSPAVATAVVEGVLERITYANEETGYTVARVDTGRGAGDLLTVVGSLLGAQVGESLRMQGRWGSHPQYGKQFTVENYTT
VLPATIQGIRRYLGSGLIKGIGPVMADRITTHFGVDTLDIIETEPKRLVEVPGLGPKRTKMIAAAWEEQKAIKEVMVFLQ
GVGVSTSIAVRIYKKYGDASISVVKNEPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVKAGLQYALSQSTDQGNCYLP
EERLIADAVKLLQVDTGLVIDCLAELAGEEEGVVRETVPGPDGGDDITAVYLVPFHRAELSLAGQISRLLKTPEDRMPAF
RDVAWDKALGWLADRTGATLAPEQEAAVRLALTRKVAVLTGGPGCGKSFTVRSIVELARAKKAKVVLAAPTGRAAKRLAE
LTGAEASTVHRLLELRPGGDAAYDKERPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQLPSVGAGEVLRD
MLSEGSPVPAVRLTRIFRQAQESGVVTNAHRINSGLPPLTQGMKDFFLFVEEETEDAGRLTVDVAAHRIPRKFGLDPRRD
VQVLAPMHRGPAGAGNLNGLLQQAITPARPGLPEKRFGGRVFRVGDKVTQIRNNYEKGQNGVFNGTVGVVTALDPDEQRL
TVLTDEDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVVLVGSRKALGQAV
RTVSAGRRCTALDFRLSGRRGETP

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=829232 R9806_RS25025 WP_320590924.1 5821784..5824018(+) (recD/recD2/recDB) [Streptomyces sp. KN37]
ATGTCGAGTCCAGCTGTAGCGACGGCGGTGGTCGAGGGCGTCCTCGAACGCATCACGTACGCCAATGAGGAGACCGGGTA
CACGGTCGCGCGCGTCGACACCGGCCGCGGCGCCGGCGACCTGCTCACCGTCGTCGGTTCGCTGCTCGGCGCCCAGGTCG
GCGAGTCCCTGCGGATGCAGGGCCGCTGGGGCTCCCACCCGCAGTACGGCAAGCAGTTCACCGTCGAGAACTACACGACG
GTGCTGCCCGCCACCATCCAGGGCATCCGCCGCTATCTCGGCTCCGGCCTCATCAAGGGCATCGGCCCCGTGATGGCCGA
CCGGATCACCACCCACTTCGGCGTGGACACCCTCGACATCATCGAGACCGAGCCGAAGCGCCTGGTGGAAGTGCCCGGCC
TCGGCCCCAAGCGGACGAAGATGATCGCCGCCGCCTGGGAGGAGCAGAAGGCCATCAAGGAGGTCATGGTCTTCCTCCAG
GGAGTGGGCGTCTCCACCTCCATCGCCGTGCGCATCTACAAGAAATACGGCGACGCGTCGATCTCCGTGGTGAAGAACGA
GCCGTACCGCCTCGCCGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACCGCATCGCCCAGGCCGTCGGCATCCCGC
ACGACAGCCCGGAGCGCGTCAAGGCCGGTCTCCAGTACGCCCTTTCGCAATCCACCGACCAGGGCAACTGCTACCTCCCC
GAGGAGCGCCTCATCGCCGACGCGGTGAAGCTGCTCCAGGTCGACACCGGCCTGGTCATCGACTGCCTCGCCGAGCTGGC
CGGGGAGGAGGAGGGAGTCGTCCGCGAGACCGTCCCCGGACCGGACGGCGGCGACGACATCACCGCCGTCTACCTCGTCC
CCTTCCACCGGGCCGAACTGTCCCTGGCCGGACAGATATCGCGCCTCCTGAAGACCCCCGAGGACCGCATGCCCGCCTTC
CGGGACGTCGCCTGGGACAAGGCGCTCGGCTGGCTCGCGGACCGCACCGGGGCCACGCTCGCCCCCGAGCAGGAAGCGGC
GGTGCGGCTCGCGCTGACCCGGAAGGTCGCCGTGCTGACCGGCGGGCCGGGGTGCGGCAAGTCCTTCACGGTCCGCTCCA
TCGTCGAGCTGGCCCGCGCCAAGAAGGCCAAGGTCGTCCTCGCCGCCCCCACCGGCCGCGCGGCCAAGCGCCTCGCCGAA
CTGACCGGAGCCGAGGCCTCCACGGTCCACCGCCTGCTGGAACTGAGGCCCGGAGGCGACGCGGCGTACGACAAGGAGCG
GCCGCTCGACGCCGACCTGGTCGTGGTCGACGAGGCCTCGATGCTCGACCTGCTCCTCGCCAACAAGCTGGTGAAGGCCG
TACCGCCCGGCGCCCATCTGCTCTTCGTGGGTGACGTGGACCAGCTGCCGAGTGTCGGCGCGGGGGAGGTCCTGCGGGAC
ATGCTCAGCGAGGGCAGCCCGGTCCCCGCCGTCCGCCTCACCCGCATCTTCCGGCAGGCCCAGGAGTCGGGCGTGGTCAC
CAACGCCCACCGCATCAACTCCGGCCTGCCGCCCCTCACCCAGGGCATGAAGGACTTCTTCCTCTTCGTCGAGGAGGAGA
CGGAGGACGCGGGCCGCCTCACGGTGGACGTCGCCGCCCACCGCATCCCCCGCAAGTTCGGCCTCGACCCACGCCGTGAC
GTCCAGGTCCTCGCGCCCATGCACCGAGGCCCCGCGGGCGCCGGAAACCTCAACGGGCTCCTCCAGCAGGCCATCACCCC
CGCCCGTCCCGGCCTGCCGGAGAAGCGGTTCGGTGGCCGGGTCTTCCGCGTCGGCGACAAGGTCACCCAGATCCGCAACA
ACTACGAGAAGGGCCAGAACGGCGTCTTCAACGGCACGGTGGGCGTCGTCACCGCCCTCGACCCCGACGAGCAGCGGCTC
ACCGTCCTGACCGACGAGGACGAGGAAGTCCCCTACGACTTCGACGAACTGGACGAGCTGGCCCACGCGTACGCCGTGAC
GATCCACCGCTCCCAGGGCAGCGAGTACCCGGCCGTGGTGATCCCGGTCACCACGGGCGCCTGGATGATGCTGCAGCGCA
ACTTGCTCTACACCGCCGTGACACGCGCCAAGAAGCTGGTGGTCCTCGTCGGTTCGCGCAAAGCTCTGGGGCAGGCCGTA
CGCACGGTCTCCGCGGGCAGACGTTGTACGGCACTGGATTTCAGGCTCTCGGGGCGCCGCGGAGAGACCCCGTGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(662-710)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(577-642)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-238)

AAA domain (AAA_30)

(339-518)

Helix-hairpin-helix domain (HHH_5)

(98-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.471

100

0.364