Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   R9806_RS16470 Genome accession   NZ_CP139044
Coordinates   3941245..3941973 (-) Length   242 a.a.
NCBI ID   WP_223776129.1    Uniprot ID   -
Organism   Streptomyces sp. KN37     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3936245..3946973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9806_RS16455 (R9806_16455) - 3938465..3939160 (-) 696 WP_223776132.1 demethylmenaquinone methyltransferase -
  R9806_RS16460 (R9806_16460) - 3939352..3939951 (-) 600 WP_223776131.1 hypothetical protein -
  R9806_RS16465 (R9806_16465) mqnC 3939959..3941173 (-) 1215 WP_223776130.1 cyclic dehypoxanthinyl futalosine synthase -
  R9806_RS16470 (R9806_16470) pilD 3941245..3941973 (-) 729 WP_223776129.1 prepilin peptidase Machinery gene
  R9806_RS16475 (R9806_16475) - 3941982..3945032 (-) 3051 WP_320590225.1 BTAD domain-containing putative transcriptional regulator -
  R9806_RS16480 (R9806_16480) - 3945259..3945636 (+) 378 WP_223776127.1 hypothetical protein -
  R9806_RS16485 (R9806_16485) - 3945648..3946112 (-) 465 WP_320590226.1 TadE/TadG family type IV pilus assembly protein -
  R9806_RS16490 (R9806_16490) - 3946109..3946567 (-) 459 WP_320590227.1 TadE/TadG family type IV pilus assembly protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 24402.80 Da        Isoelectric Point: 8.6835

>NTDB_id=829208 R9806_RS16470 WP_223776129.1 3941245..3941973(-) (pilD) [Streptomyces sp. KN37]
MDVSLVLLALGGALWGALTGALVPRAAYRLSVPPDDTWRGECPEGHPLGGWLGLARCGHGDRYGPRTALVTAATAAVCAA
LALTTGPRPELAAWLLLAPVGVLLTVVDFGVHRLPDVLTLPLAGAALALLGGAALLPGHGGSWTGALYGALALAGAYFVL
FLINPNGMGFGDVKLALALGAALGWYGWGVLLLGTFAGFLLASLYGIALVAARRAGRKTAIPFGPFLLGGAFAGVLLGAY
TA

Nucleotide


Download         Length: 729 bp        

>NTDB_id=829208 R9806_RS16470 WP_223776129.1 3941245..3941973(-) (pilD) [Streptomyces sp. KN37]
GTGGACGTCTCGCTCGTGCTCCTCGCCCTCGGCGGCGCGCTCTGGGGCGCCCTCACCGGCGCCCTCGTGCCCCGCGCCGC
CTACCGCCTCTCCGTCCCGCCGGACGACACCTGGCGAGGCGAGTGTCCTGAGGGGCACCCCCTCGGCGGCTGGCTCGGGC
TCGCGCGGTGCGGGCACGGGGACCGTTACGGGCCCCGCACCGCCCTGGTCACCGCGGCCACCGCGGCCGTCTGCGCCGCC
CTCGCCCTCACCACCGGCCCCCGCCCCGAACTCGCCGCCTGGCTGCTGCTCGCTCCCGTCGGCGTCCTCCTGACCGTCGT
CGACTTCGGGGTGCACCGGCTGCCGGACGTCCTCACGCTGCCGCTCGCCGGGGCCGCGCTCGCGCTGCTCGGGGGCGCCG
CGCTGCTGCCCGGGCACGGCGGCTCGTGGACCGGGGCGCTGTACGGGGCGCTCGCGCTGGCCGGGGCGTACTTCGTGCTC
TTCCTGATCAACCCCAACGGCATGGGGTTCGGTGACGTGAAGCTCGCCCTCGCGCTCGGGGCGGCGCTCGGCTGGTACGG
CTGGGGCGTGCTGCTGCTCGGCACCTTCGCCGGGTTCCTGCTGGCCTCGCTGTACGGCATCGCGCTCGTCGCGGCCCGCC
GCGCGGGGCGCAAGACGGCGATCCCCTTCGGGCCCTTCCTGCTCGGCGGCGCCTTCGCGGGCGTGCTGCTCGGGGCGTAC
ACCGCCTGA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(96-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

32.836

100

0.364