Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SID94_RS01195 Genome accession   NZ_CP139039
Coordinates   262143..262907 (-) Length   254 a.a.
NCBI ID   WP_001136211.1    Uniprot ID   -
Organism   Escherichia coli MP1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 257143..267907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SID94_RS01165 (SID94_01165) - 257777..259135 (-) 1359 WP_001304938.1 PTS galactitol transporter subunit IIC -
  SID94_RS01170 (SID94_01170) - 259212..259493 (-) 282 WP_000084021.1 PTS sugar transporter subunit IIB -
  SID94_RS01175 (SID94_01175) - 259490..259963 (-) 474 WP_001161647.1 PTS sugar transporter subunit IIA -
  SID94_RS01180 (SID94_01180) - 259988..260734 (-) 747 WP_001296489.1 GntR family transcriptional regulator -
  SID94_RS01185 (SID94_01185) nikR 260933..261334 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  SID94_RS01190 (SID94_01190) nikE 261340..262146 (-) 807 WP_001765188.1 nickel import ATP-binding protein NikE -
  SID94_RS01195 (SID94_01195) amiE 262143..262907 (-) 765 WP_001136211.1 nickel import ATP-binding protein NikD Regulator
  SID94_RS01200 (SID94_01200) nikC 262907..263740 (-) 834 WP_001008957.1 nickel ABC transporter permease subunit NikC -
  SID94_RS01205 (SID94_01205) nikB 263737..264681 (-) 945 WP_000947070.1 nickel ABC transporter permease subunit NikB -
  SID94_RS01210 (SID94_01210) nikA 264681..266255 (-) 1575 WP_001765189.1 nickel ABC transporter substrate-binding protein -
  SID94_RS01215 (SID94_01215) acpT 266366..266953 (-) 588 WP_000285789.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26812.45 Da        Isoelectric Point: 6.9016

>NTDB_id=829094 SID94_RS01195 WP_001136211.1 262143..262907(-) (amiE) [Escherichia coli MP1]
MPQQIELRNIALQAAQPLVHGVSLTLKRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=829094 SID94_RS01195 WP_001136211.1 262143..262907(-) (amiE) [Escherichia coli MP1]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTTAA
ACGCGGGCGTGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCACTGACCTGCGCCGCGACGCTGGGCATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCTCCCTGTGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGTGCCTTTAATCCGCTTCACACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCACGCGTGC
TGAAGCTGTACCCGTTTGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGTTGTGTGAATCGCCG
TTTATCATCGCCGATGAACCGACCACCGATCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAGGCACCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCGCACGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAATGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398