Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   SH576_RS30440 Genome accession   NZ_CP139036
Coordinates   6415596..6416120 (-) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa strain MAS152     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6410596..6421120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SH576_RS30425 (SH576_30400) aroB 6411724..6412830 (-) 1107 WP_033989914.1 3-dehydroquinate synthase -
  SH576_RS30430 (SH576_30405) aroK 6412880..6413398 (-) 519 WP_003095833.1 shikimate kinase AroK -
  SH576_RS30435 (SH576_30410) pilQ 6413410..6415542 (-) 2133 WP_033989912.1 type 4a pilus secretin PilQ Machinery gene
  SH576_RS30440 (SH576_30415) comL/pilP 6415596..6416120 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  SH576_RS30445 (SH576_30420) pilO 6416117..6416740 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  SH576_RS30450 (SH576_30425) pilN 6416737..6417333 (-) 597 WP_003141783.1 type 4a pilus biogenesis protein PilN -
  SH576_RS30455 (SH576_30430) pilM 6417333..6418397 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  SH576_RS30460 (SH576_30435) - 6418582..6421053 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=829068 SH576_RS30440 WP_003116136.1 6415596..6416120(-) (comL/pilP) [Pseudomonas aeruginosa strain MAS152]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=829068 SH576_RS30440 WP_003116136.1 6415596..6416120(-) (comL/pilP) [Pseudomonas aeruginosa strain MAS152]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAC
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362