Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   H7677_RS04030 Genome accession   NZ_AP023391
Coordinates   817680..818519 (+) Length   279 a.a.
NCBI ID   WP_184494205.1    Uniprot ID   -
Organism   Streptococcus suis strain DAT299     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 812680..823519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7677_RS04000 (DAT299_07440) - 813145..814023 (+) 879 WP_002939795.1 F0F1 ATP synthase subunit gamma -
  H7677_RS04005 (DAT299_07450) atpD 814043..815449 (+) 1407 WP_002936008.1 F0F1 ATP synthase subunit beta -
  H7677_RS04010 (DAT299_07460) - 815459..815875 (+) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  H7677_RS04015 - 815935..816159 (+) 225 WP_044671347.1 DUF1146 family protein -
  H7677_RS04020 (DAT299_07470) murA 816183..817466 (+) 1284 WP_002936006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  H7677_RS04025 (DAT299_07480) - 817459..817650 (+) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  H7677_RS04030 (DAT299_07490) endA 817680..818519 (+) 840 WP_184494205.1 DNA/RNA non-specific endonuclease Machinery gene
  H7677_RS04035 (DAT299_07500) - 818706..820259 (+) 1554 WP_024394170.1 MFS transporter -
  H7677_RS04040 (DAT299_07510) - 820315..821343 (+) 1029 WP_184494207.1 sugar kinase -
  H7677_RS04045 (DAT299_07520) uidA 821359..823161 (+) 1803 WP_184494209.1 beta-glucuronidase -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30179.34 Da        Isoelectric Point: 6.2370

>NTDB_id=82897 H7677_RS04030 WP_184494205.1 817680..818519(+) (endA) [Streptococcus suis strain DAT299]
MAKKNVRKQAMSLLSLLATIVVVAGGYLLSDNKSSNLADYSYYVNQSKASEGTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQIHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRIRYRVTLVYAESEDLVSV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=82897 H7677_RS04030 WP_184494205.1 817680..818519(+) (endA) [Streptococcus suis strain DAT299]
ATGGCGAAGAAAAATGTAAGAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGTTA
TCTTTTAAGTGATAACAAGAGCAGTAACCTTGCTGACTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGTGCT
GGAGCATTTATTATTAACGGGAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
AACAGTCCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCCAAATCTACACGTCAGTATAAGGACCGTGAAG
AAACAGGAAATGGTCGGACTTCTTGGACACCTGCGGGTTGGCATCAGATCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGGCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGTTTTGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTATCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTTCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGCGGTCTCAG
TATCAATTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

69.492

84.588

0.588
  endA Streptococcus pneumoniae D39

69.492

84.588

0.588
  endA Streptococcus pneumoniae R6

69.492

84.588

0.588
  endA Streptococcus pneumoniae TIGR4

69.492

84.588

0.588

Multiple sequence alignment