Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QGN23_RS14395 Genome accession   NZ_CP124855
Coordinates   3167967..3168620 (-) Length   217 a.a.
NCBI ID   WP_282904934.1    Uniprot ID   -
Organism   Chryseobacterium gotjawalense strain wdc7     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3162967..3173620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QGN23_RS14375 (QGN23_14375) - 3164737..3165291 (-) 555 WP_282904930.1 LemA family protein -
  QGN23_RS14380 (QGN23_14380) der 3165503..3166810 (+) 1308 WP_282904931.1 ribosome biogenesis GTPase Der -
  QGN23_RS14385 (QGN23_14385) - 3166870..3167217 (+) 348 WP_282904932.1 four helix bundle protein -
  QGN23_RS14390 (QGN23_14390) upp 3167277..3167927 (+) 651 WP_282904933.1 uracil phosphoribosyltransferase -
  QGN23_RS14395 (QGN23_14395) comF 3167967..3168620 (-) 654 WP_282904934.1 ComF family protein Machinery gene
  QGN23_RS14400 (QGN23_14400) - 3168728..3170200 (-) 1473 WP_282904935.1 helix-turn-helix domain-containing protein -
  QGN23_RS14405 (QGN23_14405) aceB 3170377..3171954 (+) 1578 WP_282904936.1 malate synthase A -
  QGN23_RS14410 (QGN23_14410) aceA 3172143..3173429 (+) 1287 WP_282904937.1 isocitrate lyase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25200.25 Da        Isoelectric Point: 7.7683

>NTDB_id=828506 QGN23_RS14395 WP_282904934.1 3167967..3168620(-) (comF) [Chryseobacterium gotjawalense strain wdc7]
MFLVDLLFPNRCLECNRIIPSEEVICELCFDQINFTHHHISESNLLTEKCRLLFPIENAFSLMQFEEESTSQKIIHQLKY
GSREKIGKIIANWTVEKLDFSDSKPNLLVTVPLHPKKQKERGYNQLHLFGETLSKELKIPIDHHLIKRNFYKKAQAKKSK
EQRIFNENLFSVTKNISNQHILLIDDVFTTGNTMSAIAWEILKAGDNKVSVLVMAMD

Nucleotide


Download         Length: 654 bp        

>NTDB_id=828506 QGN23_RS14395 WP_282904934.1 3167967..3168620(-) (comF) [Chryseobacterium gotjawalense strain wdc7]
ATGTTTTTAGTAGACTTACTTTTTCCGAATCGCTGTCTGGAATGCAACCGAATTATTCCTTCGGAGGAAGTGATTTGTGA
ACTGTGTTTTGATCAAATCAATTTTACTCATCATCACATTTCCGAAAGCAATCTTCTAACTGAGAAATGCCGTTTACTTT
TTCCCATTGAAAACGCTTTCTCATTGATGCAGTTTGAGGAAGAAAGCACGAGTCAGAAAATTATTCATCAATTAAAATAC
GGAAGTCGGGAGAAAATCGGGAAAATCATTGCCAATTGGACGGTGGAAAAATTAGATTTTTCGGATTCAAAACCCAACCT
TTTAGTGACCGTTCCACTCCATCCAAAAAAGCAGAAAGAACGTGGCTATAACCAGTTACACCTTTTCGGGGAGACCCTTT
CGAAAGAGCTAAAAATCCCCATTGACCACCATTTAATTAAACGTAACTTTTACAAGAAAGCACAAGCTAAAAAAAGCAAA
GAGCAAAGAATTTTCAATGAAAATCTGTTTTCAGTCACCAAAAACATTTCCAATCAGCATATTTTATTGATCGATGATGT
TTTCACGACTGGAAATACGATGAGCGCCATTGCCTGGGAAATTTTAAAAGCCGGAGATAATAAAGTGAGCGTTTTGGTGA
TGGCAATGGATTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(3-37)

Phosphoribosyl transferase domain (Pribosyltran)

(129-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

53.456

100

0.535