Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SGQ72_RS05685 Genome accession   NZ_CP138881
Coordinates   1193285..1194058 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain 263     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1188285..1199058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGQ72_RS05665 (SGQ72_05665) trmFO 1188629..1189936 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  SGQ72_RS05670 (SGQ72_05670) xerC 1190353..1191249 (+) 897 WP_001015609.1 tyrosine recombinase XerC -
  SGQ72_RS05675 (SGQ72_05675) hslV 1191246..1191791 (+) 546 WP_217654605.1 ATP-dependent protease subunit HslV -
  SGQ72_RS05680 (SGQ72_05680) hslU 1191857..1193260 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  SGQ72_RS05685 (SGQ72_05685) codY 1193285..1194058 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SGQ72_RS05690 (SGQ72_05690) - 1194109..1194201 (+) 93 WP_031788481.1 hypothetical protein -
  SGQ72_RS05695 (SGQ72_05695) rpsB 1194400..1195167 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  SGQ72_RS05700 (SGQ72_05700) - 1195201..1195314 (+) 114 WP_001789890.1 hypothetical protein -
  SGQ72_RS05705 (SGQ72_05705) tsf 1195349..1196230 (+) 882 WP_000201387.1 translation elongation factor Ts -
  SGQ72_RS05710 (SGQ72_05710) pyrH 1196367..1197089 (+) 723 WP_000057330.1 UMP kinase -
  SGQ72_RS05715 (SGQ72_05715) frr 1197108..1197662 (+) 555 WP_001280006.1 ribosome recycling factor -
  SGQ72_RS05720 (SGQ72_05720) - 1198035..1198805 (+) 771 WP_000473699.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=828496 SGQ72_RS05685 WP_000055337.1 1193285..1194058(+) (codY) [Staphylococcus aureus strain 263]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=828496 SGQ72_RS05685 WP_000055337.1 1193285..1194058(+) (codY) [Staphylococcus aureus strain 263]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428