Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QJ053_RS07755 Genome accession   NZ_CP124853
Coordinates   1588394..1588840 (-) Length   148 a.a.
NCBI ID   WP_001790850.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ED83     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1583394..1593840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJ053_RS07725 (QJ053_07720) gcvPA 1584320..1585666 (-) 1347 WP_000019697.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QJ053_RS07730 (QJ053_07725) gcvT 1585686..1586777 (-) 1092 WP_000093347.1 glycine cleavage system aminomethyltransferase GcvT -
  QJ053_RS07735 (QJ053_07730) - 1586936..1587460 (-) 525 WP_001015125.1 shikimate kinase -
  QJ053_RS07740 (QJ053_07735) - 1587450..1587596 (-) 147 WP_001789879.1 hypothetical protein -
  QJ053_RS07745 (QJ053_07740) comGF 1587693..1588190 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  QJ053_RS07750 (QJ053_07745) comGE 1588108..1588407 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  QJ053_RS07755 (QJ053_07750) comGD 1588394..1588840 (-) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  QJ053_RS07760 (QJ053_07755) comGC 1588818..1589129 (-) 312 WP_000472257.1 competence type IV pilus major pilin ComGC Machinery gene
  QJ053_RS07765 (QJ053_07760) comGB 1589143..1590213 (-) 1071 WP_000776412.1 competence type IV pilus assembly protein ComGB Machinery gene
  QJ053_RS07770 (QJ053_07765) comGA 1590185..1591159 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  QJ053_RS07775 (QJ053_07770) - 1591211..1591834 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QJ053_RS07780 (QJ053_07775) - 1591831..1592160 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QJ053_RS07785 (QJ053_07780) - 1592160..1593146 (-) 987 WP_000161314.1 ROK family glucokinase -
  QJ053_RS07790 (QJ053_07785) - 1593143..1593346 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17213.42 Da        Isoelectric Point: 10.3682

>NTDB_id=828426 QJ053_RS07755 WP_001790850.1 1588394..1588840(-) (comGD) [Staphylococcus aureus strain ED83]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=828426 QJ053_RS07755 WP_001790850.1 1588394..1588840(-) (comGD) [Staphylococcus aureus strain ED83]
ATGGAGAAGCAGTTGCAAATTAGAAAACAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAACTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993