Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   R8559_RS09355 Genome accession   NZ_AP026926
Coordinates   1796594..1797415 (-) Length   273 a.a.
NCBI ID   WP_000601691.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700119     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1791594..1802415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8559_RS09315 - 1792788..1792919 (+) 132 WP_001811306.1 hypothetical protein -
  R8559_RS09325 - 1793031..1793176 (-) 146 Protein_1827 cell wall-binding protein -
  R8559_RS09330 (PC0116_18320) - 1793388..1794062 (-) 675 WP_000725722.1 LiaF transmembrane domain-containing protein -
  R8559_RS09335 (PC0116_18330) - 1794068..1794514 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  R8559_RS09340 - 1794628..1795131 (-) 504 WP_000800939.1 phosphatase PAP2 family protein -
  R8559_RS09345 (PC0116_18340) - 1795128..1795490 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  R8559_RS09350 (PC0116_18350) rcrQ 1795556..1796587 (-) 1032 WP_000346795.1 ABC transporter ATP-binding protein Regulator
  R8559_RS09355 (PC0116_18360) rcrP 1796594..1797415 (-) 822 WP_000601691.1 ABC transporter permease Regulator
  R8559_RS09360 (PC0116_18370) - 1797432..1797902 (-) 471 WP_000360532.1 MarR family winged helix-turn-helix transcriptional regulator -
  R8559_RS09365 (PC0116_18380) - 1798026..1798742 (-) 717 WP_000532874.1 YebC/PmpR family DNA-binding transcriptional regulator -
  R8559_RS09370 (PC0116_18390) ply 1799623..1801038 (-) 1416 WP_001284359.1 cholesterol-dependent cytolysin pneumolysin -
  R8559_RS09375 (PC0116_18400) - 1801049..1801459 (-) 411 WP_000595757.1 hypothetical protein -
  R8559_RS09380 (PC0116_18410) - 1801452..1802060 (-) 609 WP_000083614.1 hypothetical protein -

Sequence

Protein


Download         Length: 273 a.a.        Molecular weight: 30487.14 Da        Isoelectric Point: 5.9135

>NTDB_id=82838 R8559_RS09355 WP_000601691.1 1796594..1797415(-) (rcrP) [Streptococcus pneumoniae strain PZ900700119]
MILLAILFTCFSVYLELEVPTYISKITDLLGSQGTNLDELWQPASMMMGMPFLAFLSVVAVGFFASRVAASYTSRLRSDI
FNRVLDYSQTEIKKFSIPSLLMRTTNDITQVQMLITMGLQVVTCGPIMAIWAIGKILGHSEYWLWAVLVAVIVNVLMTTV
LMTLAFPKQSLIQGLTDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAVNDELTRLNLFVNRLMAILNPIMMGISSGLSV
AIYWIGAYVINDAAPIARLPLFSDMIVFMSYAM

Nucleotide


Download         Length: 822 bp        

>NTDB_id=82838 R8559_RS09355 WP_000601691.1 1796594..1797415(-) (rcrP) [Streptococcus pneumoniae strain PZ900700119]
ATGATTTTACTAGCCATTCTCTTTACTTGCTTTTCGGTCTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTAC
GGATTTGCTAGGTAGTCAAGGAACTAATTTAGATGAGTTGTGGCAGCCGGCAAGCATGATGATGGGAATGCCCTTTCTTG
CCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCCCGAGTGGCGGCTTCTTATACTAGTAGGCTGAGAAGTGATATT
TTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAAGAAATTTTCAATTCCTAGCCTCTTGATGCGTACTACCAATGA
CATTACTCAAGTTCAAATGTTGATTACTATGGGCTTGCAAGTGGTAACGTGTGGTCCAATTATGGCTATCTGGGCTATTG
GGAAGATTTTAGGTCATTCAGAATACTGGCTCTGGGCCGTACTTGTGGCAGTGATTGTCAACGTCCTGATGACGACCGTT
TTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCAGGGGCTGACAGATAAACTGAACAGTATCACTCGTGAGAGTTT
AACAGGTATTCGTGTCGTTCGTGCCTACAATGCAGAGGATTATCAAAATGAAAAATTTGCAGCAGTAAATGATGAATTGA
CCCGTTTAAATTTGTTTGTCAACCGTCTTATGGCTATTTTGAATCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTG
GCGATTTACTGGATTGGGGCCTATGTGATTAACGACGCTGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTGT
TTTCATGTCTTATGCCATGTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(3-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

57.193

100

0.597

Multiple sequence alignment