Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   R8559_RS08600 Genome accession   NZ_AP026926
Coordinates   1667093..1668364 (+) Length   423 a.a.
NCBI ID   WP_050200165.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700119     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1662093..1673364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8559_RS08565 (PC0116_17040) - 1663154..1663582 (-) 429 WP_000418168.1 NUDIX hydrolase -
  R8559_RS08570 (PC0116_17050) - 1663563..1664651 (-) 1089 WP_000719722.1 site-2 protease family protein -
  R8559_RS08575 (PC0116_17060) - 1664670..1665140 (-) 471 WP_000257107.1 DUF3013 family protein -
  R8559_RS08580 (PC0116_17070) - 1665431..1665883 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  R8559_RS08585 (PC0116_17080) - 1665920..1666099 (-) 180 WP_050200164.1 type II toxin-antitoxin system HicA family toxin -
  R8559_RS08590 (PC0116_17090) - 1666236..1666415 (-) 180 WP_001048906.1 hypothetical protein -
  R8559_RS08595 (PC0116_17100) - 1666580..1666801 (-) 222 WP_000425689.1 hypothetical protein -
  R8559_RS08600 (PC0116_17110) rarA 1667093..1668364 (+) 1272 WP_050200165.1 replication-associated recombination protein A Machinery gene
  R8559_RS08610 (PC0116_17120) - 1668909..1670228 (-) 1320 WP_050200167.1 glycoside hydrolase family 32 protein -
  R8559_RS08615 (PC0116_17130) - 1670238..1671854 (-) 1617 WP_000669745.1 ABC transporter substrate-binding protein -
  R8559_RS08620 (PC0116_17140) - 1671883..1672773 (-) 891 WP_050200168.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46998.47 Da        Isoelectric Point: 6.0996

>NTDB_id=82827 R8559_RS08600 WP_050200165.1 1667093..1668364(+) (rarA) [Streptococcus pneumoniae strain PZ900700119]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFNFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDESIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=82827 R8559_RS08600 WP_050200165.1 1667093..1668364(+) (rarA) [Streptococcus pneumoniae strain PZ900700119]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCTGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTTTCCG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTTGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTAATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGAGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGGTTCCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTACGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCGTTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.279

99.054

0.567

Multiple sequence alignment