Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QJS65_RS08010 Genome accession   NZ_CP124831
Coordinates   1572982..1573761 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain Sample7_7     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1567982..1578761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJS65_RS07990 (QJS65_07990) trmFO 1568686..1569990 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QJS65_RS07995 (QJS65_07995) xerC 1570053..1570970 (+) 918 WP_039166693.1 tyrosine recombinase XerC -
  QJS65_RS08000 (QJS65_08000) hslV 1570985..1571530 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  QJS65_RS08005 (QJS65_08005) hslU 1571547..1572947 (+) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  QJS65_RS08010 (QJS65_08010) codY 1572982..1573761 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QJS65_RS08015 (QJS65_08015) flgB 1574051..1574440 (+) 390 WP_282747135.1 flagellar basal body rod protein FlgB -
  QJS65_RS08020 (QJS65_08020) flgC 1574440..1574892 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  QJS65_RS08025 (QJS65_08025) fliE 1574904..1575221 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  QJS65_RS08030 (QJS65_08030) fliF 1575272..1576864 (+) 1593 WP_017359091.1 flagellar basal-body MS-ring/collar protein FliF -
  QJS65_RS08035 (QJS65_08035) fliG 1576876..1577892 (+) 1017 WP_034281776.1 flagellar motor switch protein FliG -
  QJS65_RS08040 (QJS65_08040) fliH 1577885..1578649 (+) 765 WP_017367245.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=828210 QJS65_RS08010 WP_007499612.1 1572982..1573761(+) (codY) [Bacillus altitudinis strain Sample7_7]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=828210 QJS65_RS08010 WP_007499612.1 1572982..1573761(+) (codY) [Bacillus altitudinis strain Sample7_7]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAGCCGGTTAATTTTAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCAATCAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471