Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SGW63_RS01805 Genome accession   NZ_CP138670
Coordinates   371843..372616 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain DA70500     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 366843..377616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW63_RS01770 - 367096..367866 (-) 771 WP_000473705.1 isoprenyl transferase -
  SGW63_RS01775 frr 368239..368793 (-) 555 WP_001280006.1 ribosome recycling factor -
  SGW63_RS01780 pyrH 368812..369534 (-) 723 WP_000057330.1 UMP kinase -
  SGW63_RS01785 tsf 369671..370552 (-) 882 WP_000201387.1 translation elongation factor Ts -
  SGW63_RS01790 - 370587..370700 (-) 114 WP_001789890.1 hypothetical protein -
  SGW63_RS01795 rpsB 370734..371501 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  SGW63_RS01800 - 371700..371792 (-) 93 WP_001790530.1 hypothetical protein -
  SGW63_RS01805 codY 371843..372616 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SGW63_RS01810 hslU 372641..374044 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  SGW63_RS01815 hslV 374110..374655 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  SGW63_RS01820 xerC 374652..375548 (-) 897 WP_338438956.1 tyrosine recombinase XerC -
  SGW63_RS01825 trmFO 375965..377272 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=827601 SGW63_RS01805 WP_000055337.1 371843..372616(-) (codY) [Staphylococcus aureus strain DA70500]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=827601 SGW63_RS01805 WP_000055337.1 371843..372616(-) (codY) [Staphylococcus aureus strain DA70500]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428