Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SGW61_RS05855 Genome accession   NZ_CP138664
Coordinates   1212594..1213367 (+) Length   257 a.a.
NCBI ID   WP_000055334.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70504     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1207594..1218367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW61_RS05835 trmFO 1207937..1209244 (+) 1308 WP_042744193.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  SGW61_RS05840 xerC 1209662..1210558 (+) 897 WP_001015604.1 tyrosine recombinase XerC -
  SGW61_RS05845 hslV 1210555..1211100 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  SGW61_RS05850 hslU 1211166..1212569 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  SGW61_RS05855 codY 1212594..1213367 (+) 774 WP_000055334.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SGW61_RS05860 - 1213418..1213510 (+) 93 WP_031785459.1 hypothetical protein -
  SGW61_RS05865 rpsB 1213709..1214476 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  SGW61_RS05870 - 1214510..1214623 (+) 114 WP_001789890.1 hypothetical protein -
  SGW61_RS05875 tsf 1214658..1215539 (+) 882 WP_000201387.1 translation elongation factor Ts -
  SGW61_RS05880 pyrH 1215676..1216398 (+) 723 WP_000057330.1 UMP kinase -
  SGW61_RS05885 frr 1216417..1216971 (+) 555 WP_001280003.1 ribosome recycling factor -
  SGW61_RS05890 - 1217343..1218113 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28727.12 Da        Isoelectric Point: 6.0680

>NTDB_id=827261 SGW61_RS05855 WP_000055334.1 1212594..1213367(+) (codY) [Staphylococcus aureus strain DA70504]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENKELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=827261 SGW61_RS05855 WP_000055334.1 1212594..1213367(+) (codY) [Staphylococcus aureus strain DA70504]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAATAAAGAGTTGTTTAT
TGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTATTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGC
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACACATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428