Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SGW65_RS06025 Genome accession   NZ_CP138661
Coordinates   1233233..1234006 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain DA70870     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1228233..1239006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW65_RS06005 trmFO 1228577..1229884 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  SGW65_RS06010 xerC 1230301..1231197 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  SGW65_RS06015 hslV 1231194..1231739 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  SGW65_RS06020 hslU 1231805..1233208 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  SGW65_RS06025 codY 1233233..1234006 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SGW65_RS06030 - 1234057..1234149 (+) 93 WP_001790530.1 hypothetical protein -
  SGW65_RS06035 rpsB 1234348..1235115 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  SGW65_RS06040 - 1235149..1235262 (+) 114 WP_001789890.1 hypothetical protein -
  SGW65_RS06045 tsf 1235297..1236178 (+) 882 WP_000201387.1 translation elongation factor Ts -
  SGW65_RS06050 pyrH 1236315..1237037 (+) 723 WP_000057330.1 UMP kinase -
  SGW65_RS06055 frr 1237056..1237610 (+) 555 WP_001280006.1 ribosome recycling factor -
  SGW65_RS06060 - 1237983..1238753 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=826993 SGW65_RS06025 WP_000055337.1 1233233..1234006(+) (codY) [Staphylococcus aureus strain DA70870]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=826993 SGW65_RS06025 WP_000055337.1 1233233..1234006(+) (codY) [Staphylococcus aureus strain DA70870]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428