Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QI003_RS16895 Genome accession   NZ_CP124601
Coordinates   3357095..3359491 (-) Length   798 a.a.
NCBI ID   WP_282372892.1    Uniprot ID   -
Organism   Bacillus stercoris strain BS21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3352095..3364491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI003_RS16875 (QI003_16875) - 3354700..3355761 (-) 1062 WP_282372888.1 AI-2E family transporter -
  QI003_RS24210 - 3355864..3356123 (+) 260 Protein_3284 amino acid ABC transporter permease -
  QI003_RS16880 (QI003_16880) - 3356158..3356289 (-) 132 WP_014664797.1 DUF3918 family protein -
  QI003_RS16885 (QI003_16885) - 3356311..3356502 (-) 192 WP_003225893.1 hypothetical protein -
  QI003_RS16890 (QI003_16890) - 3356514..3357038 (-) 525 WP_082032957.1 hypothetical protein -
  QI003_RS16895 (QI003_16895) recD2 3357095..3359491 (-) 2397 WP_282372892.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QI003_RS16900 (QI003_16900) - 3359516..3360136 (-) 621 WP_206696623.1 tetratricopeptide repeat protein -
  QI003_RS16905 (QI003_16905) mnmA 3360222..3361337 (-) 1116 WP_004398509.1 tRNA 2-thiouridine(34) synthase MnmA -
  QI003_RS16910 (QI003_16910) - 3361365..3362507 (-) 1143 WP_014664801.1 cysteine desulfurase family protein -
  QI003_RS16915 (QI003_16915) cymR 3362526..3362942 (-) 417 WP_003225879.1 cysteine metabolism transcriptional regulator CymR -
  QI003_RS16920 (QI003_16920) - 3363145..3364410 (+) 1266 WP_282372894.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89171.78 Da        Isoelectric Point: 4.9548

>NTDB_id=826638 QI003_RS16895 WP_282372892.1 3357095..3359491(-) (recD2) [Bacillus stercoris strain BS21]
MQQHPDQLKLEEEPYLKGTVNTVIYHNDTNLYTVLKVKVTETSEAIEDKAVSVTGYFPALQEEETYTFYGKIVTHPKFGL
QFQAEHFKKEIPTTKEGIIQYLSSDLFEGIGKKTAEEIVKKLGDSAINKILADASVLYDVPRLSKKKADTLAGALQRHQG
LEQIMISLNQFGFGPQLSMKIYQAYESETLEKIQENPYQLVKDVEGIGFGKADELGGRMGLSGNHPERVKAAILYTLEMT
CLSEGHTYIETEQLIIDTQSLLNQSAKEDQRITEMDAANAIIALGENKDIVIEDGRCYFPSLFYAEQNVAKRVKHIASQT
EYDDQFPESEFLLALGELEERMNVQYAPSQKEAIQKALSSPMLLLTGGPGTGKTTVIRGIVELYGELHGVSLDPSAYKKD
EAFPIVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFSHTEDEPIEGKLLIIDEASMLDIWLANHLFKAIPDHIQI
IIVGDEDQLPSVGPGQVLRDLLASQVIPTVRLTDIYRQAEGSSIVELAHQMKNGLLPNNLTAPTKDRSFIRCGGSQIKEV
VEKVVANALKKGYTAKDIQVLAPMYRGKAGINELNVMLQDILNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGD
IGEITSIFYAKENTEKEDMAVVSFDGNEMTFTKKDFNQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAIT
RAKKFLILCGEEEALEWGVKNNDATVRQTSLKNRLSVQVEEMDAELEALQKELPFSVHDANIGMEGITPFDFMKEEQL

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=826638 QI003_RS16895 WP_282372892.1 3357095..3359491(-) (recD2) [Bacillus stercoris strain BS21]
GTGCAGCAGCATCCGGATCAGCTTAAACTGGAGGAAGAGCCCTATTTAAAAGGGACAGTTAACACAGTCATCTATCATAA
TGACACCAATTTATATACGGTTCTGAAAGTGAAAGTCACAGAGACCTCCGAAGCCATAGAAGATAAAGCCGTATCCGTGA
CGGGCTACTTCCCTGCGCTTCAAGAAGAAGAGACCTACACGTTTTACGGAAAGATCGTAACACACCCGAAATTCGGGCTC
CAATTTCAAGCGGAGCATTTCAAAAAAGAGATACCGACGACTAAGGAAGGCATCATACAATATTTATCGAGTGATTTATT
CGAGGGAATCGGCAAAAAAACAGCTGAAGAAATTGTGAAAAAGCTGGGCGACAGCGCCATTAACAAAATATTGGCTGACG
CTTCAGTGCTTTATGATGTTCCGAGGCTCTCAAAAAAGAAAGCAGACACGCTGGCCGGTGCCTTGCAGCGGCATCAGGGG
CTGGAGCAAATCATGATTTCCCTGAACCAGTTTGGTTTTGGTCCGCAGCTGTCCATGAAAATCTATCAAGCCTATGAATC
CGAGACGCTTGAAAAGATTCAAGAAAATCCTTATCAGCTTGTGAAGGACGTAGAAGGCATCGGGTTTGGAAAAGCGGATG
AGCTGGGCGGCAGAATGGGTCTTTCGGGTAACCATCCTGAGCGGGTAAAAGCTGCGATTCTGTACACGCTTGAAATGACT
TGTCTGTCAGAGGGGCACACGTACATAGAAACGGAGCAGCTGATCATCGATACCCAATCACTGTTAAACCAGTCAGCAAA
GGAAGATCAGCGCATCACAGAAATGGATGCCGCTAACGCGATTATTGCTCTTGGAGAAAATAAAGACATTGTCATAGAAG
ATGGACGCTGTTATTTTCCATCGCTGTTTTACGCAGAACAAAACGTTGCTAAGCGAGTGAAACATATCGCAAGCCAAACT
GAATATGATGACCAGTTTCCCGAATCAGAATTTCTGCTCGCTTTGGGGGAATTGGAAGAACGGATGAACGTTCAGTATGC
CCCCAGCCAGAAGGAAGCGATTCAAAAAGCCCTTTCCTCGCCGATGCTTCTTTTAACAGGCGGCCCAGGAACAGGGAAAA
CGACAGTTATCAGAGGGATTGTCGAGCTCTACGGAGAGCTTCACGGTGTGTCACTAGACCCGTCAGCTTATAAAAAGGAT
GAAGCTTTTCCGATTGTTTTGGCCGCTCCGACAGGGAGAGCAGCAAAACGAATGAGTGAATCAACGGGACTTCCTGCAGT
CACGATACACAGGCTGCTTGGCTGGAACGGCGCTGAAGGCTTTTCCCATACAGAGGATGAGCCGATTGAAGGGAAGCTGT
TAATAATCGATGAAGCCAGCATGCTTGATATATGGCTGGCGAACCATCTATTCAAGGCGATCCCTGATCATATACAAATC
ATCATTGTCGGAGACGAAGACCAGTTGCCTTCTGTAGGTCCGGGCCAAGTGCTGAGAGACCTACTGGCATCCCAGGTGAT
TCCCACGGTGAGACTGACAGACATCTACCGCCAGGCTGAGGGGTCATCAATCGTCGAGCTTGCCCACCAGATGAAAAATG
GATTGCTGCCGAACAATTTGACTGCCCCCACAAAGGACCGATCCTTTATTCGCTGCGGAGGCTCGCAAATTAAAGAAGTT
GTTGAAAAAGTTGTCGCCAATGCATTGAAAAAAGGCTATACGGCAAAGGACATTCAGGTCCTCGCTCCGATGTACAGAGG
AAAAGCCGGCATCAATGAGTTGAATGTGATGCTGCAGGACATTTTAAATCCTCCTAAAGAAAAACGGAGAGAATTGAAGT
TCGGGGATGTTGTCTACAGAACCGGAGATAAAATTTTGCAGCTTGTCAATCAGCCGGAAAACAATGTATTCAACGGAGAT
ATTGGCGAAATTACGTCGATATTTTATGCAAAGGAAAATACAGAAAAAGAAGACATGGCCGTCGTTTCTTTTGATGGCAA
TGAAATGACGTTTACGAAAAAAGATTTTAATCAATTTACCCATGCGTATTGCTGTTCTATTCATAAATCGCAGGGAAGTG
AATTTCCGATTGTGGTTTTGCCTGTTGTGAAAGGCTACTATAGAATGCTCAGAAGAAACCTTCTTTATACCGCGATTACA
AGAGCGAAGAAATTTCTCATTTTATGCGGGGAAGAGGAGGCGCTGGAGTGGGGCGTGAAAAATAATGATGCAACTGTCAG
ACAGACCTCCTTAAAAAACAGGCTGTCCGTACAGGTTGAGGAAATGGATGCCGAGCTTGAGGCTCTCCAAAAAGAGCTCC
CATTCAGCGTACACGACGCCAACATTGGCATGGAAGGCATTACACCATTTGATTTTATGAAAGAAGAACAGCTGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-662)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

AAA domain (AAA_30)

(346-553)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

98.871

99.875

0.987