Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QI003_RS12110 Genome accession   NZ_CP124601
Coordinates   2411053..2411832 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus stercoris strain BS21     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2406053..2416832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI003_RS12090 (QI003_12090) trmFO 2406746..2408053 (+) 1308 WP_069149591.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QI003_RS12095 (QI003_12095) xerC 2408121..2409035 (+) 915 WP_014663961.1 tyrosine recombinase XerC -
  QI003_RS12100 (QI003_12100) clpQ 2409048..2409593 (+) 546 WP_014663962.1 ATP-dependent protease subunit ClpQ -
  QI003_RS12105 (QI003_12105) hslU 2409601..2411013 (+) 1413 WP_255220399.1 HslU--HslV peptidase ATPase subunit -
  QI003_RS12110 (QI003_12110) codY 2411053..2411832 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QI003_RS12115 (QI003_12115) flgB 2412213..2412602 (+) 390 WP_014663964.1 flagellar basal body rod protein FlgB -
  QI003_RS12120 (QI003_12120) flgC 2412602..2413054 (+) 453 WP_014663965.1 flagellar basal body rod protein FlgC -
  QI003_RS12125 (QI003_12125) fliE 2413065..2413385 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  QI003_RS12130 (QI003_12130) fliF 2413431..2415041 (+) 1611 WP_040083177.1 flagellar basal-body MS-ring/collar protein FliF -
  QI003_RS12135 (QI003_12135) fliG 2415054..2416070 (+) 1017 WP_014663967.1 flagellar motor switch protein FliG -
  QI003_RS12140 (QI003_12140) fliH 2416063..2416815 (+) 753 WP_282372022.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=826617 QI003_RS12110 WP_003220850.1 2411053..2411832(+) (codY) [Bacillus stercoris strain BS21]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=826617 QI003_RS12110 WP_003220850.1 2411053..2411832(+) (codY) [Bacillus stercoris strain BS21]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTCATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATACACTGCTTTCCCTGTTGAGAACAGAGACTTATTCCA
AGCTGGTTTAACGACAATTGTGCCGATCATCGGAGGAGGGGAAAGATTAGGAACACTCATTCTTTCACGTTTACAGGATC
AATTCAATGATGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGTAAAGCTGTTGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGCCTTCTCGTTGCTAGTAAAATCGCTGACCGCGTCGGCATTACCC
GTTCGGTTATTGTGAACGCACTGAGAAAGCTGGAGAGTGCCGGCGTCATTGAGTCAAGATCATTAGGAATGAAAGGTACT
TATATCAAAGTGCTAAACAACAAATTCCTAATCGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467