Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SE698_RS20105 Genome accession   NZ_CP138428
Coordinates   4175553..4176317 (+) Length   254 a.a.
NCBI ID   WP_089601759.1    Uniprot ID   -
Organism   Escherichia coli strain 6EVA     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4170553..4181317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE698_RS20085 acpT 4171507..4172094 (+) 588 WP_000285783.1 4'-phosphopantetheinyl transferase AcpT -
  SE698_RS20090 nikA 4172205..4173779 (+) 1575 WP_319054209.1 nickel ABC transporter substrate-binding protein -
  SE698_RS20095 nikB 4173779..4174723 (+) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  SE698_RS20100 nikC 4174720..4175553 (+) 834 WP_001008803.1 nickel ABC transporter permease subunit NikC -
  SE698_RS20105 amiE 4175553..4176317 (+) 765 WP_089601759.1 nickel import ATP-binding protein NikD Regulator
  SE698_RS20110 nikE 4176314..4177120 (+) 807 WP_319054212.1 nickel import ATP-binding protein NikE -
  SE698_RS20115 nikR 4177126..4177527 (+) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  SE698_RS20120 - 4177647..4178006 (-) 360 WP_000593555.1 type II toxin-antitoxin system HicB family antitoxin -
  SE698_RS20125 - 4178003..4178278 (-) 276 WP_001259381.1 type II toxin-antitoxin system HicA family toxin -
  SE698_RS20130 yhhJ 4178351..4179475 (-) 1125 WP_001216257.1 ABC transporter permease -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26863.44 Da        Isoelectric Point: 6.5992

>NTDB_id=826490 SE698_RS20105 WP_089601759.1 4175553..4176317(+) (amiE) [Escherichia coli strain 6EVA]
MPQQIELRNIALQAAQPLVHSVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=826490 SE698_RS20105 WP_089601759.1 4175553..4176317(+) (amiE) [Escherichia coli strain 6EVA]
ATGCCGCAACAGATTGAACTACGTAATATCGCTCTACAGGCCGCGCAGCCGCTGGTGCACAGTGTATCGTTAACCCTGCA
ACGCGGGCGTGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCACTGACCTGCGCCGCGACGCTGGGCATTCTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAGATTTTAGCCGATGGCAAACCAGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCGCTACACACCATGCACACTCACGCGCGGGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACAAGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.2

98.425

0.406
  amiE Streptococcus thermophilus LMD-9

41.2

98.425

0.406
  amiE Streptococcus salivarius strain HSISS4

40

98.425

0.394