Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QA541_RS06910 Genome accession   NZ_CP124577
Coordinates   1317386..1319779 (-) Length   797 a.a.
NCBI ID   WP_420493791.1    Uniprot ID   -
Organism   Macrococcus psychrotolerans strain NRL/St 21/332     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1312386..1324779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA541_RS06890 (QA541_06885) - 1313450..1313761 (-) 312 WP_099482913.1 DUF1292 domain-containing protein -
  QA541_RS06895 (QA541_06890) ruvX 1313777..1314196 (-) 420 WP_219492272.1 Holliday junction resolvase RuvX -
  QA541_RS06900 (QA541_06895) - 1314189..1314434 (-) 246 WP_241427516.1 IreB family regulatory phosphoprotein -
  QA541_RS06905 (QA541_06900) alaS 1314514..1317138 (-) 2625 WP_419894996.1 alanine--tRNA ligase -
  QA541_RS06910 (QA541_06905) recD2 1317386..1319779 (-) 2394 WP_420493791.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QA541_RS06915 (QA541_06910) - 1319782..1320441 (-) 660 WP_219492277.1 tetratricopeptide repeat protein -
  QA541_RS06920 (QA541_06915) mnmA 1320502..1321617 (-) 1116 WP_219492280.1 tRNA 2-thiouridine(34) synthase MnmA -
  QA541_RS06925 (QA541_06920) - 1321629..1322756 (-) 1128 WP_101140268.1 cysteine desulfurase family protein -
  QA541_RS06930 (QA541_06925) - 1322928..1323923 (+) 996 WP_219492284.1 LLM class flavin-dependent oxidoreductase -
  QA541_RS06935 (QA541_06930) - 1324325..1324747 (-) 423 WP_012657169.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 90179.52 Da        Isoelectric Point: 4.5385

>NTDB_id=826464 QA541_RS06910 WP_420493791.1 1317386..1319779(-) (recD2) [Macrococcus psychrotolerans strain NRL/St 21/332]
MENMTLFEQSFVKGTITRILFYNNDNFYTVLKAEVIESNEDFDDDATITGYLPQIAEGDTYTFTGKIVTHPKYGKQLQAD
KFEKDMPQSRDGIIHYLSSDLFKGVGKKTARTIVEVLGEDALNIILDDKSSLDQVPKLSDEKKELIYSTIHDNQAIEKIM
IRLNEFGFGPQLAMKIYQFYKDDTLKVINESPYQLVMDIEGIGFNKADELAGKLGIDNNHPERLKAALVFTIEQASNQNG
HTYIPDQVLLETSFNLLTKNGSQVNPDRLVIALTELTEEHKLVEHEKNIYIPSLFYSETKAVQILHRLMNHKDQVKQFEQ
SEVLMAIGDLETLFEVSYAERQKDALVTAMNAKLMILTGGPGTGKTTVVRGIVNLYAELHGLSLDYDDYDGQDYPIVVAA
PTGRASKRLQESTGLEATTIHRLIGWTKENKPDDVLETEITAKLVIIDEMSMVDTWLMFQLMKAVPNDAQIIFVGDQDQL
PSVGPGQVFKDMIDAQIMPQIELNEVYRQQEGSSIVELAHQIKRNEPFDITKRYNDRSFIPCSSNQIPDVIEKIVRSAVS
KGYDMRDIQVLVPIYRGPAGIRALNKVLQEILNPSDENKRELQFGDVCFRTGDKVLQLVNRPEDNVFNGDIGEVIGIFMA
AENALNKDVVIVDYDGSEVTYTKADLMEVTHAYCCSIHKSQGSEFPIVIMPVVNQYYRMLQKNILYTGLTRAKQSLIFCG
DIQAFNEGIKRIGNARFTSFYQFLIEYFKTDEADDTQHVNSDGNILPFNVGEMTEDNMHLVDPMINMEGITPYDFIS

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=826464 QA541_RS06910 WP_420493791.1 1317386..1319779(-) (recD2) [Macrococcus psychrotolerans strain NRL/St 21/332]
TTGGAAAATATGACTTTGTTTGAGCAATCCTTTGTAAAAGGGACAATAACGAGAATATTATTTTATAACAATGATAATTT
CTATACTGTGCTGAAAGCTGAAGTGATTGAATCAAATGAAGATTTCGATGATGATGCTACGATTACAGGATACCTTCCGC
AAATTGCTGAAGGTGATACATATACTTTTACCGGGAAGATTGTAACGCATCCGAAGTACGGAAAGCAGCTACAGGCGGAT
AAATTTGAGAAGGATATGCCACAGTCGCGTGACGGTATTATTCATTATCTATCAAGTGATCTGTTTAAAGGAGTCGGTAA
GAAAACAGCGAGAACGATTGTAGAAGTGCTTGGTGAAGATGCACTGAACATTATTCTTGATGATAAAAGTAGTCTTGACC
AGGTGCCGAAGTTATCAGATGAGAAGAAAGAATTAATCTATAGTACGATTCATGATAATCAGGCAATCGAGAAGATTATG
ATTCGACTGAATGAATTTGGCTTCGGGCCACAGCTTGCGATGAAGATTTATCAGTTCTATAAGGACGATACGCTGAAGGT
GATTAATGAATCCCCGTATCAACTCGTGATGGATATTGAAGGTATCGGATTTAATAAGGCAGATGAACTGGCAGGGAAAC
TCGGTATCGATAACAATCACCCAGAACGTCTGAAAGCAGCGCTCGTGTTTACGATAGAACAAGCCTCTAACCAGAATGGA
CATACATATATTCCGGACCAGGTATTACTTGAAACAAGCTTCAATCTACTGACGAAAAATGGCAGTCAAGTCAATCCTGA
TCGTCTCGTTATCGCACTCACTGAACTGACAGAGGAACATAAGCTCGTTGAACATGAGAAGAACATCTATATCCCGAGTC
TATTCTATTCTGAAACAAAAGCTGTACAAATATTGCATCGATTAATGAATCATAAGGATCAGGTGAAACAATTCGAACAG
TCAGAAGTGTTGATGGCAATTGGGGATCTGGAAACCTTGTTTGAAGTCAGCTATGCAGAACGTCAGAAAGATGCACTTGT
TACGGCGATGAACGCTAAGCTGATGATTCTAACGGGGGGTCCTGGTACAGGAAAGACAACGGTAGTGCGTGGTATTGTGA
ATTTATATGCCGAGCTGCATGGCTTAAGTCTCGATTATGATGACTATGACGGACAGGACTATCCTATTGTCGTCGCAGCA
CCAACTGGTCGTGCATCGAAGCGTCTTCAGGAATCGACAGGACTTGAAGCGACGACGATACACAGGTTAATTGGATGGAC
GAAAGAAAATAAACCGGACGATGTGCTAGAAACCGAAATTACAGCGAAACTGGTCATTATTGATGAAATGTCAATGGTTG
ATACGTGGCTCATGTTTCAATTGATGAAGGCTGTACCAAACGATGCCCAGATTATATTTGTCGGTGACCAGGACCAGCTC
CCATCGGTCGGTCCGGGGCAAGTATTTAAGGATATGATAGATGCACAAATTATGCCCCAAATTGAGTTGAACGAAGTGTA
CAGGCAGCAGGAAGGTTCATCAATCGTTGAACTTGCACACCAAATTAAGCGTAATGAACCATTTGATATTACGAAACGCT
ATAACGATAGAAGCTTTATCCCGTGCTCAAGCAATCAAATACCAGATGTGATTGAGAAAATTGTGCGTAGTGCTGTGAGT
AAAGGGTATGATATGCGTGACATACAAGTACTCGTACCGATATATAGAGGACCAGCAGGTATACGTGCGCTGAACAAAGT
GCTGCAGGAAATATTGAATCCAAGTGATGAAAACAAGCGTGAACTGCAGTTTGGAGATGTTTGTTTCAGAACGGGTGATA
AGGTTCTGCAGCTTGTCAATCGACCTGAAGATAACGTATTTAATGGTGATATCGGAGAAGTTATCGGCATCTTTATGGCA
GCTGAGAATGCATTAAACAAAGATGTTGTGATTGTTGACTATGATGGTAGTGAAGTAACGTATACGAAAGCAGATTTAAT
GGAAGTTACGCATGCATACTGCTGTTCTATTCATAAGTCTCAAGGTTCGGAATTTCCGATAGTAATCATGCCGGTTGTCA
ATCAGTACTACAGAATGCTGCAGAAGAATATACTATATACTGGATTAACGCGTGCGAAACAATCACTTATTTTTTGTGGA
GATATACAGGCTTTTAATGAAGGGATAAAGCGTATCGGTAACGCAAGGTTTACAAGCTTCTATCAGTTCCTTATCGAATA
TTTTAAGACAGATGAAGCGGATGATACACAGCATGTTAATTCAGATGGAAACATATTGCCATTCAATGTTGGTGAGATGA
CAGAAGACAATATGCATCTCGTTGATCCGATGATCAACATGGAAGGCATTACACCATATGATTTTATAAGTTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(671-718)

AAA domain (AAA_30)

(338-544)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-653)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.623

100

0.509