Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QJV49_RS08135 Genome accession   NZ_CP124538
Coordinates   1602043..1602831 (+) Length   262 a.a.
NCBI ID   WP_225513024.1    Uniprot ID   A0AA49EUE0
Organism   Lactococcus sp. NH2-7C     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1597043..1607831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJV49_RS08110 (QJV49_08110) - 1597404..1598195 (+) 792 WP_225512380.1 DNA/RNA non-specific endonuclease -
  QJV49_RS08115 (QJV49_08115) - 1598361..1598570 (+) 210 WP_010905160.1 hypothetical protein -
  QJV49_RS08120 (QJV49_08120) - 1598582..1598821 (+) 240 WP_225512379.1 hypothetical protein -
  QJV49_RS08125 (QJV49_08125) - 1599018..1600601 (+) 1584 WP_225512378.1 glycosyltransferase -
  QJV49_RS08130 (QJV49_08130) - 1600676..1601890 (+) 1215 WP_281449126.1 pyridoxal phosphate-dependent aminotransferase -
  QJV49_RS08135 (QJV49_08135) codY 1602043..1602831 (+) 789 WP_225513024.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QJV49_RS08140 (QJV49_08140) gatC 1603277..1603582 (+) 306 WP_010905163.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  QJV49_RS08145 (QJV49_08145) gatA 1603582..1605048 (+) 1467 WP_017864006.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  QJV49_RS08150 (QJV49_08150) gatB 1605048..1606481 (+) 1434 WP_225513025.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29142.48 Da        Isoelectric Point: 4.5254

>NTDB_id=826343 QJV49_RS08135 WP_225513024.1 1602043..1602831(+) (codY) [Lactococcus sp. NH2-7C]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLGDFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLILVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=826343 QJV49_RS08135 WP_225513024.1 1602043..1602831(+) (codY) [Lactococcus sp. NH2-7C]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATATAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAATGCATGCGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTACAATACAAACAATGACCGTGTTGACCAATTTTTCTATGATCGTAAATTGCCTGATGAATATGTT
CGTGCGGCAGTACGTATCTACGATACAATGGCAAACGTTCCTGTTGACCGTCCATTAGCAATCTTCCCAGAAGAAAGCCT
TGGCGATTTTCCAAAAGGTGTGACAACTTTAGCACCTATTTATGGTTCTGGAATGCGTTTGGGAACATTTATCATGTGGC
GTGAAGACGGCGAATTCACTGATGATGATTTGATCTTAGTTGAACTTGCAACAACAGTAATTGGTGTTCAACTCTCAAAT
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACCATGGCAACTATGGCTGTTAACACACTTTCATATTCAGA
AATGAAAGCTGTTAAAGCAATTATTGAAGAGCTTGATGGTGAAGAAGGACATGTTATTGCTTCTGTCATTGCTGACAAGA
TTGGTATTACACGTTCAGTCATCGTTAATGCCTTACGTAAACTTGAATCTGCTGGTGTAATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTATTTGATAAACTTGCAGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(201-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

99.618

100

0.996
  codY Bacillus subtilis subsp. subtilis str. 168

48.031

96.947

0.466