Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   QJV49_RS05930 Genome accession   NZ_CP124538
Coordinates   1186883..1187821 (-) Length   312 a.a.
NCBI ID   WP_225512556.1    Uniprot ID   A0AA49EYE8
Organism   Lactococcus sp. NH2-7C     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1181883..1192821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJV49_RS05905 (QJV49_05905) frr 1182001..1182558 (-) 558 WP_225512560.1 ribosome recycling factor -
  QJV49_RS05910 (QJV49_05910) pyrH 1182771..1183487 (-) 717 WP_021464089.1 UMP kinase -
  QJV49_RS05915 (QJV49_05915) - 1183572..1184024 (-) 453 WP_225512559.1 hypothetical protein -
  QJV49_RS05920 (QJV49_05920) - 1184156..1185343 (-) 1188 WP_225512558.1 acetate kinase -
  QJV49_RS05925 (QJV49_05925) - 1185501..1186688 (-) 1188 WP_225512557.1 acetate kinase -
  QJV49_RS05930 (QJV49_05930) comYH 1186883..1187821 (-) 939 WP_225512556.1 class I SAM-dependent methyltransferase Machinery gene
  QJV49_RS05935 (QJV49_05935) - 1187905..1188156 (-) 252 WP_004254583.1 DUF3165 family protein -
  QJV49_RS05940 (QJV49_05940) typA 1188257..1190089 (-) 1833 WP_025016832.1 translational GTPase TypA -
  QJV49_RS05945 (QJV49_05945) - 1190277..1190735 (-) 459 WP_225512555.1 hypothetical protein -
  QJV49_RS05950 (QJV49_05950) - 1190737..1191141 (-) 405 WP_225512554.1 hypothetical protein -
  QJV49_RS05955 (QJV49_05955) - 1191155..1191781 (-) 627 WP_225512553.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34782.94 Da        Isoelectric Point: 4.3717

>NTDB_id=826326 QJV49_RS05930 WP_225512556.1 1186883..1187821(-) (comYH) [Lactococcus sp. NH2-7C]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAAFLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEIAKNFEVAATDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=826326 QJV49_RS05930 WP_225512556.1 1186883..1187821(-) (comYH) [Lactococcus sp. NH2-7C]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTACTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTTTTTTAGATGATACTGACCAAGGGATTGTTGAGCTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGATCACAA
GTCGCACCACTTCAGCCCAATCATGCGATGACTCCAGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGTATGGGTAATCTTGCTGAAACTCTTTTGGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTGCTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCGGTACAAAAGCGTTTGATGGAACCTGCTGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCAGATGATGAAATTGCAAAGAATTTTGAAGTTGCGGCTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCGTTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTGAAAGAGTGGATTAGTAAACATGGAAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGACCGGCTGCACATGCAACATTTGCTCACCCTTTATCTTCGCTGA
CAGACAGAGAAAGCTTAGAAGTTTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

49.521

100

0.497
  comYH Streptococcus mutans UA159

49.201

100

0.494