Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SE693_RS06040 Genome accession   NZ_CP138412
Coordinates   1304720..1305484 (-) Length   254 a.a.
NCBI ID   WP_001136244.1    Uniprot ID   -
Organism   Escherichia coli strain 50EVA     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1299720..1310484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE693_RS06015 yhhJ 1301576..1302700 (+) 1125 WP_001314210.1 ABC transporter permease -
  SE693_RS06020 - 1302804..1303034 (+) 231 WP_042014162.1 type II toxin-antitoxin system HicA family toxin -
  SE693_RS06025 - 1303031..1303390 (+) 360 WP_000593555.1 type II toxin-antitoxin system HicB family antitoxin -
  SE693_RS06030 nikR 1303510..1303911 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  SE693_RS06035 nikE 1303917..1304723 (-) 807 WP_000173666.1 nickel import ATP-binding protein NikE -
  SE693_RS06040 amiE 1304720..1305484 (-) 765 WP_001136244.1 nickel import ATP-binding protein NikD Regulator
  SE693_RS06045 nikC 1305484..1306317 (-) 834 WP_001008968.1 nickel ABC transporter permease subunit NikC -
  SE693_RS06050 nikB 1306314..1307258 (-) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  SE693_RS06055 nikA 1307258..1308832 (-) 1575 WP_000953353.1 nickel ABC transporter substrate-binding protein -
  SE693_RS06060 acpT 1308943..1309530 (-) 588 WP_000285784.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26837.41 Da        Isoelectric Point: 6.5992

>NTDB_id=826039 SE693_RS06040 WP_001136244.1 1304720..1305484(-) (amiE) [Escherichia coli strain 50EVA]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKTADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=826039 SE693_RS06040 WP_001136244.1 1304720..1305484(-) (amiE) [Escherichia coli strain 50EVA]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAAACCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACAAGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

42

98.425

0.413
  amiE Streptococcus thermophilus LMD-9

42

98.425

0.413
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398