Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SE697_RS23185 Genome accession   NZ_CP138397
Coordinates   4741918..4742682 (+) Length   254 a.a.
NCBI ID   WP_135996731.1    Uniprot ID   -
Organism   Escherichia coli strain 81EVA     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4736918..4747682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE697_RS23165 acpT 4737872..4738459 (+) 588 WP_000285774.1 4'-phosphopantetheinyl transferase AcpT -
  SE697_RS23170 nikA 4738570..4740144 (+) 1575 WP_000953353.1 nickel ABC transporter substrate-binding protein -
  SE697_RS23175 nikB 4740144..4741088 (+) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  SE697_RS23180 nikC 4741085..4741918 (+) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  SE697_RS23185 amiE 4741918..4742682 (+) 765 WP_135996731.1 nickel import ATP-binding protein NikD Regulator
  SE697_RS23190 nikE 4742679..4743485 (+) 807 WP_000173631.1 nickel import ATP-binding protein NikE -
  SE697_RS23195 nikR 4743491..4743892 (+) 402 WP_319766675.1 nickel-responsive transcriptional regulator NikR -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26832.43 Da        Isoelectric Point: 6.3761

>NTDB_id=825854 SE697_RS23185 WP_135996731.1 4741918..4742682(+) (amiE) [Escherichia coli strain 81EVA]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHIHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSDGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=825854 SE697_RS23185 WP_135996731.1 4741918..4742682(+) (amiE) [Escherichia coli strain 81EVA]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACATCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCTGACGGTAAGATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACAGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398