Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SE861_RS06835 Genome accession   NZ_CP138371
Coordinates   1360624..1362393 (-) Length   589 a.a.
NCBI ID   WP_001227937.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain R31-snf2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1355624..1367393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE861_RS06815 (SE861_06815) - 1355968..1358040 (+) 2073 WP_000726914.1 bifunctional metallophosphatase/5'-nucleotidase -
  SE861_RS06820 (SE861_06820) - 1358077..1358487 (-) 411 WP_000594939.1 peptide deformylase -
  SE861_RS06825 (SE861_06825) gdhA 1358557..1359906 (-) 1350 WP_319098983.1 NADP-specific glutamate dehydrogenase -
  SE861_RS06830 (SE861_06830) - 1360074..1360583 (+) 510 WP_000870955.1 HdeD family acid-resistance protein -
  SE861_RS06835 (SE861_06835) rcrQ 1360624..1362393 (-) 1770 WP_001227937.1 ABC transporter ATP-binding protein Regulator
  SE861_RS06840 (SE861_06840) rcrP 1362398..1364137 (-) 1740 WP_000323506.1 ABC transporter ATP-binding protein Regulator
  SE861_RS06845 (SE861_06845) - 1364204..1364677 (-) 474 WP_000586885.1 GNAT family N-acetyltransferase -
  SE861_RS06850 (SE861_06850) - 1364674..1366542 (-) 1869 WP_001279320.1 ABC-F family ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 66201.63 Da        Isoelectric Point: 6.4494

>NTDB_id=825664 SE861_RS06835 WP_001227937.1 1360624..1362393(-) (rcrQ) [Streptococcus agalactiae strain R31-snf2]
MRKKSVFLRLWSYLTRYKATLFLAIFLKVLSSFMSVLEPFILGLAITELTANLVDMAKGVSGAELNVPYIAGILIIYFFR
GVFYELGSYGSNYFMTTVVQKSIRDIRHDLNHKINKVPVSYFDKHQFGDMLGRFTSDVETVSNVLQQSFLQIINAFLSII
LVVVMVLYLNVPLAMIIIACIPVTYFSAQAILKRSQPYFKEQAKILGELNGFVQEKLTGFNIIKLYGREEASSQEFRDIT
DNLRHVGFKASFISGIMMPVLNGISDFIYLIIAFVGGLQVIAGTLTIGNMQAFVQYVWQISQPVQTITQLAGVLQSAKSS
LERIFEVLDEEEEANQVTEKLSHDLTGQVSFHGVDFHYSPDKPLIRDFNLNVEPGQMIAIVGPTGAGKTTLINLLMRFYD
VSEGAITVDGHDIRHLSRQDFRQQFGMVLQDAWLYEGTIKENLRFGNLEASDEDIVAAAKAANVDHFIRTLPGGYNMVMN
QESSNISLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMKKLMEGRTSFVIAHRLSTIQEADNILVLKDGQ
IIEQGNHQHLLADKGFYYELYNSQFSNSK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=825664 SE861_RS06835 WP_001227937.1 1360624..1362393(-) (rcrQ) [Streptococcus agalactiae strain R31-snf2]
ATGAGAAAAAAATCTGTTTTTTTGAGATTATGGTCTTACCTAACTCGCTACAAAGCTACTCTTTTCTTAGCGATTTTTTT
GAAAGTTTTATCTAGTTTTATGAGTGTTCTGGAGCCTTTTATTTTAGGGTTAGCGATAACAGAGTTGACTGCTAACCTTG
TTGATATGGCTAAGGGAGTTTCTGGGGCAGAATTGAACGTTCCTTATATTGCTGGTATTTTGATTATTTATTTTTTCAGA
GGTGTTTTCTATGAATTAGGTTCTTATGGCTCAAATTATTTTATGACTACTGTCGTTCAAAAAAGTATCCGTGATATCCG
TCATGATTTGAATCATAAAATCAATAAAGTTCCTGTATCGTATTTTGATAAGCACCAATTTGGAGATATGTTGGGACGTT
TTACAAGTGATGTTGAAACGGTCTCAAATGTTTTACAACAGAGCTTTTTACAGATTATCAATGCTTTTTTAAGTATTATT
TTAGTAGTCGTTATGGTACTTTATCTAAATGTACCATTAGCCATGATTATCATTGCTTGTATTCCTGTAACTTATTTTAG
TGCACAAGCGATACTAAAAAGATCCCAACCTTACTTTAAAGAACAGGCAAAGATTCTGGGAGAACTGAATGGTTTTGTAC
AAGAGAAATTAACTGGTTTCAATATCATAAAATTATATGGTAGAGAAGAGGCGTCTAGTCAAGAATTTCGTGATATAACG
GATAATCTACGTCATGTAGGTTTCAAAGCTAGCTTCATTTCAGGAATTATGATGCCAGTATTGAATGGTATCTCTGATTT
TATTTACCTTATCATTGCATTTGTTGGCGGTTTACAAGTTATTGCTGGTACCTTAACAATTGGTAACATGCAGGCATTTG
TGCAGTATGTTTGGCAAATTAGTCAACCCGTTCAAACCATTACACAATTAGCAGGTGTTTTGCAAAGTGCAAAATCTTCC
TTAGAACGTATTTTTGAAGTCTTAGATGAAGAAGAGGAAGCCAATCAAGTCACTGAAAAATTGAGCCATGACTTAACCGG
TCAAGTCAGCTTTCATGGTGTCGATTTTCACTATTCTCCGGATAAGCCACTTATCCGCGACTTTAACTTAAACGTAGAAC
CAGGGCAAATGATTGCAATTGTAGGGCCAACAGGTGCAGGTAAGACAACACTTATAAACTTACTCATGAGATTCTACGAT
GTTAGTGAAGGTGCTATCACCGTAGATGGTCACGATATTAGACACCTATCACGCCAAGATTTCCGGCAACAATTTGGCAT
GGTGTTGCAAGATGCTTGGTTATATGAAGGTACAATAAAAGAAAATCTTAGATTCGGTAATCTTGAAGCCAGTGATGAGG
ATATAGTTGCTGCTGCCAAAGCTGCGAATGTTGACCACTTTATTCGAACGTTACCTGGTGGCTACAATATGGTGATGAAT
CAAGAATCAAGCAATATCTCCTTAGGACAAAAGCAACTGTTGACTATTGCACGTGCTTTATTAGCAGATCCTAAAATTTT
AATTTTAGATGAAGCGACTTCATCTGTTGATACAAGGTTGGAATTGCTTATTCAAAAAGCTATGAAAAAATTGATGGAAG
GAAGAACTAGTTTTGTCATTGCACACCGTCTATCAACGATTCAAGAGGCAGACAACATTTTAGTTCTAAAGGATGGTCAA
ATCATCGAACAAGGTAATCACCAGCACCTCCTAGCAGATAAAGGATTTTATTACGAATTATATAATAGCCAATTTTCAAA
TAGTAAATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-304)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

45.331

100

0.453