Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   SE861_RS03565 Genome accession   NZ_CP138371
Coordinates   660747..661532 (+) Length   261 a.a.
NCBI ID   WP_000825438.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain R31-snf2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 655747..666532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE861_RS03540 (SE861_03540) - 655995..656813 (+) 819 WP_001080093.1 ABC-2 family transporter protein -
  SE861_RS03545 (SE861_03545) - 656815..657603 (+) 789 Protein_617 ABC transporter permease -
  SE861_RS03550 (SE861_03550) - 657683..658816 (+) 1134 WP_000564846.1 ISAs1-like element IS1548 family transposase -
  SE861_RS03555 (SE861_03555) - 658901..658996 (+) 96 Protein_619 ABC transporter ATP-binding protein -
  SE861_RS03560 (SE861_03560) - 659053..660497 (-) 1445 Protein_620 FAD/NAD(P)-binding protein -
  SE861_RS03565 (SE861_03565) endA 660747..661532 (+) 786 WP_000825438.1 DNA/RNA non-specific endonuclease Machinery gene
  SE861_RS03570 (SE861_03570) - 661608..662246 (-) 639 WP_000478536.1 VTT domain-containing protein -
  SE861_RS03575 (SE861_03575) - 662463..663119 (+) 657 WP_000121090.1 ATP-binding cassette domain-containing protein -
  SE861_RS03580 (SE861_03580) - 663116..663889 (+) 774 WP_000011926.1 ABC transporter permease -
  SE861_RS03585 (SE861_03585) - 664053..664868 (+) 816 WP_319099099.1 phosphate ABC transporter ATPase -
  SE861_RS03590 (SE861_03590) - 664909..665793 (-) 885 WP_000354835.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29450.90 Da        Isoelectric Point: 8.9989

>NTDB_id=825629 SE861_RS03565 WP_000825438.1 660747..661532(+) (endA) [Streptococcus agalactiae strain R31-snf2]
MKRLHKLFITVIATLGMLGVMTFGLPTQPQNVTPIVHADVNSSVDTSQEFQNNLKNAIGNLPFQYVNGIYELNNNQTNLN
ADVNVKAYVQNTIDNQQRPSTANAMLDRTIRQYQNRRDTTLPDANWKPLGWHQVATNDHYGHAVDKGHLIAYALAGNFKG
WDASVSNPQNVVTQTAHSNQSNQKINRGQNYYESLVRKAVDQNKRVRYRVTPLYRNDTDLVPFAMHLEAKSQDVTLEFNV
AIPNTQASYTMDYATGEITLN

Nucleotide


Download         Length: 786 bp        

>NTDB_id=825629 SE861_RS03565 WP_000825438.1 660747..661532(+) (endA) [Streptococcus agalactiae strain R31-snf2]
ATGAAAAGATTACATAAACTGTTTATAACCGTAATTGCTACATTAGGTATGTTGGGGGTAATGACCTTTGGTCTTCCAAC
GCAGCCGCAAAACGTAACACCGATAGTACATGCTGATGTCAATTCATCTGTTGATACGAGCCAGGAATTTCAAAATAATT
TAAAAAATGCTATTGGTAACCTACCATTTCAATATGTTAATGGTATTTATGAATTAAATAATAATCAAACAAATTTAAAT
GCTGATGTCAACGTTAAAGCGTATGTTCAAAATACAATTGACAATCAACAAAGACCATCAACTGCTAATGCAATGCTTGA
TAGAACCATTCGTCAATATCAAAATCGCAGAGATACCACTCTTCCCGATGCAAATTGGAAACCATTAGGTTGGCATCAAG
TAGCTACTAATGACCATTATGGGCATGCAGTCGACAAGGGGCATTTAATTGCCTATGCTTTAGCTGGAAATTTCAAAGGC
TGGGATGCTTCCGTGTCAAATCCTCAAAATGTTGTCACACAAACAGCTCATTCCAACCAATCAAATCAAAAAATCAATCG
TGGACAAAATTATTATGAAAGCTTAGTTCGTAAGGCGGTTGACCAAAACAAACGTGTTCGTTACCGTGTAACTCCATTGT
ACCGTAATGATACTGATTTAGTTCCATTTGCAATGCACCTAGAAGCTAAATCACAAGATGTCACATTAGAATTTAATGTT
GCTATTCCAAACACACAAGCATCATATACTATGGATTATGCAACAGGAGAAATAACACTAAATTAA

Domains

Predicted by InterProScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(77-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

51.515

75.862

0.391
  endA Streptococcus pneumoniae D39

51.515

75.862

0.391
  endA Streptococcus pneumoniae R6

51.515

75.862

0.391
  endA Streptococcus pneumoniae TIGR4

51.515

75.862

0.391