Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SE933_RS04935 Genome accession   NZ_CP138370
Coordinates   916003..916788 (+) Length   261 a.a.
NCBI ID   WP_001133183.1    Uniprot ID   P63847
Organism   Streptococcus agalactiae strain SagR40     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 911003..921788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE933_RS04915 (SE933_04915) - 911478..912440 (-) 963 WP_000723059.1 asparaginase -
  SE933_RS04920 (SE933_04920) - 912509..913891 (+) 1383 WP_000974899.1 HAD-IIB family hydrolase -
  SE933_RS04925 (SE933_04925) - 913947..914399 (-) 453 WP_000080032.1 universal stress protein -
  SE933_RS04930 (SE933_04930) - 914666..915877 (+) 1212 WP_000688105.1 pyridoxal phosphate-dependent aminotransferase -
  SE933_RS04935 (SE933_04935) codY 916003..916788 (+) 786 WP_001133183.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SE933_RS04940 (SE933_04940) - 916855..917403 (+) 549 WP_000158740.1 cysteine hydrolase family protein -
  SE933_RS04945 (SE933_04945) - 917450..918430 (-) 981 WP_255297799.1 3-hydroxyacyl-CoA dehydrogenase -
  SE933_RS04950 (SE933_04950) - 918604..919233 (+) 630 WP_011074751.1 helix-turn-helix transcriptional regulator -
  SE933_RS04955 (SE933_04955) - 919244..920074 (+) 831 WP_000390093.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28972.08 Da        Isoelectric Point: 4.4520

>NTDB_id=825540 SE933_RS04935 WP_001133183.1 916003..916788(+) (codY) [Streptococcus agalactiae strain SagR40]
MPNLLEKTRKITSILQRSVDSLDAELPYNTMAAQLADIIDCNACIINGGGNLLGYAMKYKTNTDRVEEFFETKQFPDYYV
KSASRVYDTEANLSVDNDLSIFPVETKENFQDGITTIAPIYGGGMRLGTFIIWRNDKEFSDDDLILVEIASTVVGIQLLN
LQTENLEENIRKQTAVTMAINTLSYSEMKAVAAILGELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKEYN

Nucleotide


Download         Length: 786 bp        

>NTDB_id=825540 SE933_RS04935 WP_001133183.1 916003..916788(+) (codY) [Streptococcus agalactiae strain SagR40]
ATGCCGAATTTATTAGAAAAAACTAGAAAAATTACATCCATCTTACAGCGTTCCGTAGATAGCTTAGATGCCGAACTACC
ATATAATACAATGGCGGCTCAATTAGCTGATATTATTGACTGTAACGCATGTATTATTAATGGTGGTGGTAACTTACTTG
GCTATGCCATGAAATATAAAACAAACACTGACCGTGTGGAAGAATTTTTTGAAACAAAACAATTCCCAGATTACTATGTT
AAATCTGCTAGTCGTGTTTATGATACAGAAGCTAACTTATCAGTAGATAATGATTTGTCAATTTTCCCAGTTGAGACAAA
GGAAAACTTCCAAGATGGTATTACAACAATCGCTCCAATTTATGGTGGTGGAATGCGCTTGGGAACATTTATTATCTGGC
GTAATGATAAAGAATTTAGCGACGATGATTTGATTTTAGTTGAAATTGCAAGCACCGTTGTTGGTATTCAATTACTTAAC
CTTCAAACAGAAAATCTAGAAGAAAATATTCGTAAACAAACAGCGGTGACAATGGCTATCAACACTCTATCTTATTCAGA
AATGAAAGCTGTAGCTGCTATCTTAGGAGAATTAGATGGACTTGAAGGACGCCTAACGGCATCTGTTATTGCAGACCGTA
TTGGAATTACACGTTCCGTTATTGTAAATGCTCTTCGTAAATTGGAGTCTGCGGGAATCATTGAGAGCCGCTCACTCGGT
ATGAAGGGAACATACCTCAAAGTTATTAACGAAGGTATTTTTGACAAATTAAAAGAATATAATTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63847

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

67.433

100

0.674
  codY Bacillus subtilis subsp. subtilis str. 168

51.822

94.636

0.49