Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SE864_RS06190 Genome accession   NZ_CP138369
Coordinates   1227121..1228866 (-) Length   581 a.a.
NCBI ID   WP_161512686.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SagR31     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1222121..1233866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE864_RS06155 (SE864_06155) - 1222210..1222428 (-) 219 WP_000278092.1 helix-turn-helix domain-containing protein -
  SE864_RS06160 (SE864_06160) - 1222539..1223338 (-) 800 Protein_1139 IS30 family transposase -
  SE864_RS06165 (SE864_06165) - 1223385..1223635 (+) 251 Protein_1140 hypothetical protein -
  SE864_RS06170 (SE864_06170) - 1223991..1224254 (+) 264 Protein_1141 DUF5960 family protein -
  SE864_RS06175 (SE864_06175) - 1224510..1225004 (-) 495 WP_000482660.1 LPXTG cell wall anchor domain-containing protein -
  SE864_RS06180 (SE864_06180) - 1225023..1225289 (+) 267 Protein_1143 transposase -
  SE864_RS06185 (SE864_06185) rcrQ 1225401..1227140 (-) 1740 WP_002921285.1 ABC transporter ATP-binding protein Regulator
  SE864_RS06190 (SE864_06190) rcrP 1227121..1228866 (-) 1746 WP_161512686.1 ABC transporter ATP-binding protein Regulator
  SE864_RS06195 (SE864_06195) - 1228863..1229888 (-) 1026 WP_000845068.1 phosphotransferase family protein -
  SE864_RS06200 (SE864_06200) - 1229872..1230342 (-) 471 WP_000142891.1 MarR family winged helix-turn-helix transcriptional regulator -
  SE864_RS06205 (SE864_06205) - 1231122..1231310 (+) 189 WP_001813543.1 hypothetical protein -
  SE864_RS06210 (SE864_06210) - 1231307..1231552 (+) 246 WP_001813542.1 hypothetical protein -
  SE864_RS06215 (SE864_06215) - 1231549..1231884 (+) 336 WP_000806926.1 hypothetical protein -
  SE864_RS06220 (SE864_06220) - 1231897..1232265 (+) 369 WP_000567222.1 hypothetical protein -
  SE864_RS06225 (SE864_06225) - 1232252..1232551 (+) 300 WP_001072467.1 DUF5960 family protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 63153.56 Da        Isoelectric Point: 9.3533

>NTDB_id=825445 SE864_RS06190 WP_161512686.1 1227121..1228866(-) (rcrP) [Streptococcus agalactiae strain SagR31]
MNQIFSRVKFKKKYFVWLFTFLIIAIAGETALPTLMAEMIEQGVVNQATNSIWLLAGGMVLVVLMAFVGNMLVAKISSRI
ATLFARDVRKALFDKVQSFSGQELDKFGTASLITRTTSDVTNLQSFLSAGLQIGMLAPLMMAAGVVLVAVTGGETSSVLV
FTLPILLIAMTVVLVLATRYSKALRLTLDKINRIFLEILQGVRVIRAFNKQETEKARFGQTNSQYADISLKNNRLMGGMM
PFIQVIFGLTTIGVMAVGAEAVAKGKITVSALVANSQYVALILGAIVMAAFIISFFPTAFASMSRIGEVLGIEVKITDGD
DEQAMTEAQGTVTFKDVTFSYADAAEPVLKDISFTSKPGQVTAIIGASGSGKSSVLKLIPRLYDITFGEIKVNGRNVKDY
KLQELRDIIGYVPQKNVLFSGDIASNLNFGQEDGTEADWKRAADIASASEFIADKPGNYQSEIAQGGTNLSGGQRQRMAI
ARAMMKRPQVYLLDDSLSALDMKTDKQVRTNLRANLDQATMIMVAQRISSIMDAEQIILISEGKNAGKGTHKELLKNNDI
YRELAILQLGEEAVAYELDNA

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=825445 SE864_RS06190 WP_161512686.1 1227121..1228866(-) (rcrP) [Streptococcus agalactiae strain SagR31]
ATGAACCAAATATTTTCAAGGGTTAAATTCAAGAAAAAATACTTTGTTTGGCTATTTACTTTTCTCATTATTGCTATCGC
TGGTGAGACAGCCCTACCTACCCTTATGGCTGAGATGATTGAGCAGGGCGTTGTCAACCAAGCAACCAACAGTATTTGGC
TCTTAGCAGGGGGAATGGTACTGGTCGTGCTCATGGCCTTTGTGGGCAATATGCTAGTCGCAAAGATTTCCTCACGGATT
GCGACACTCTTTGCTCGTGATGTGCGCAAGGCACTCTTTGACAAGGTTCAGTCATTTTCTGGACAGGAGTTGGATAAGTT
TGGGACAGCCAGTCTCATTACGCGGACCACTTCAGATGTGACCAATCTTCAGTCATTCTTATCGGCAGGCTTGCAGATTG
GTATGCTGGCGCCACTTATGATGGCAGCAGGTGTAGTCCTAGTTGCTGTTACTGGTGGTGAGACCAGTAGTGTACTTGTT
TTCACTCTGCCTATCCTCTTGATTGCGATGACTGTGGTTTTGGTTTTAGCTACTCGCTATTCCAAAGCCCTGCGTTTGAC
CTTGGACAAGATTAACCGTATTTTCCTAGAAATATTACAAGGTGTCCGTGTTATCCGTGCCTTTAATAAACAGGAAACAG
AGAAAGCCCGTTTTGGTCAAACCAATAGCCAATATGCTGATATTTCTCTTAAAAACAACCGTCTCATGGGTGGGATGATG
CCTTTTATCCAAGTGATTTTTGGTCTGACTACGATTGGTGTCATGGCTGTCGGCGCTGAGGCTGTGGCTAAGGGGAAAAT
CACGGTTAGTGCCCTTGTCGCTAATAGTCAGTATGTTGCTCTCATCCTTGGTGCCATCGTCATGGCAGCCTTTATCATCA
GTTTCTTCCCGACGGCTTTTGCCAGTATGTCACGTATCGGTGAGGTTTTGGGGATCGAGGTCAAAATTACTGACGGTGAT
GATGAGCAAGCTATGACGGAAGCTCAGGGAACAGTGACCTTTAAGGATGTGACCTTCTCCTATGCTGACGCAGCAGAACC
AGTCCTAAAAGACATCAGTTTCACCTCAAAACCTGGTCAAGTGACCGCCATTATCGGTGCTAGTGGGTCAGGAAAATCTT
CAGTCCTTAAGCTTATTCCACGTCTTTACGACATCACTTTTGGTGAAATCAAGGTCAACGGTCGTAATGTCAAAGATTAT
AAATTACAGGAACTTCGAGACATTATCGGCTATGTCCCTCAGAAAAACGTCCTCTTCTCAGGTGATATCGCAAGTAACCT
CAACTTTGGTCAGGAAGACGGAACAGAGGCGGACTGGAAACGTGCAGCAGACATTGCCTCAGCCTCAGAATTTATCGCAG
ATAAGCCAGGGAATTATCAATCAGAAATTGCCCAAGGTGGGACCAATCTATCAGGTGGACAACGCCAGCGTATGGCCATT
GCCCGTGCCATGATGAAACGTCCGCAGGTTTATCTCCTTGATGATAGTCTGTCAGCACTTGATATGAAGACGGATAAACA
AGTTCGTACCAATCTGCGTGCCAACCTTGACCAAGCCACCATGATTATGGTGGCGCAACGTATCAGTTCTATCATGGACG
CTGAGCAAATTATCCTCATTAGTGAAGGAAAAAATGCAGGTAAAGGCACCCATAAAGAATTACTGAAAAACAACGACATC
TATCGTGAACTAGCTATTTTACAACTGGGAGAGGAGGCGGTTGCCTATGAACTTGACAATGCTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(349-496)

ABC transporter transmembrane region (ABC_membrane)

(18-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

35.655

100

0.37