Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SE116_RS07805 Genome accession   NZ_CP138362
Coordinates   1638770..1640044 (+) Length   424 a.a.
NCBI ID   WP_319161763.1    Uniprot ID   -
Organism   Staphylococcus aureus strain V315     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1633770..1645044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE116_RS07775 (SE116_07775) mnmA 1633972..1635090 (-) 1119 WP_000066097.1 tRNA 2-thiouridine(34) synthase MnmA -
  SE116_RS07780 (SE116_07780) - 1635091..1636233 (-) 1143 WP_000409167.1 cysteine desulfurase family protein -
  SE116_RS07785 (SE116_07785) - 1636545..1637558 (+) 1014 WP_000985900.1 LLM class flavin-dependent oxidoreductase -
  SE116_RS07790 (SE116_07790) - 1637795..1637941 (-) 147 WP_000009240.1 SAS049 family protein -
  SE116_RS07795 (SE116_07795) - 1637981..1638163 (-) 183 WP_000752909.1 CsbD family protein -
  SE116_RS07800 (SE116_07800) cymR 1638263..1638685 (-) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  SE116_RS07805 (SE116_07805) rarA 1638770..1640044 (+) 1275 WP_319161763.1 replication-associated recombination protein A Machinery gene
  SE116_RS07810 (SE116_07810) - 1640205..1640978 (-) 774 WP_000682646.1 tRNA threonylcarbamoyladenosine dehydratase -
  SE116_RS07815 (SE116_07815) - 1640978..1641106 (-) 129 WP_041204300.1 hypothetical protein -
  SE116_RS07825 (SE116_07825) aspS 1641439..1643205 (-) 1767 WP_000044802.1 aspartate--tRNA ligase -
  SE116_RS07830 (SE116_07830) hisS 1643221..1644483 (-) 1263 WP_000590826.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47236.87 Da        Isoelectric Point: 8.9293

>NTDB_id=825049 SE116_RS07805 WP_319161763.1 1638770..1640044(+) (rarA) [Staphylococcus aureus strain V315]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDKENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKSKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=825049 SE116_RS07805 WP_319161763.1 1638770..1640044(+) (rarA) [Staphylococcus aureus strain V315]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATAAAGAGAATGGTTTAAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATACCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTAAAAAGCAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(175-253)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

68.81

99.057

0.682