Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   M2Y46_RS07000 Genome accession   NZ_AP023347
Coordinates   1456716..1456997 (-) Length   93 a.a.
NCBI ID   WP_001272688.1    Uniprot ID   -
Organism   Helicobacter pylori strain JSHR6     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1451716..1461997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Y46_RS06980 (JSHR6_14010) - 1452426..1453766 (-) 1341 WP_248415357.1 hypothetical protein -
  M2Y46_RS06990 (JSHR6_14020) comB4 1454087..1456450 (-) 2364 WP_248415358.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  M2Y46_RS06995 (JSHR6_14030) comB3 1456453..1456716 (-) 264 WP_000584962.1 hypothetical protein Machinery gene
  M2Y46_RS07000 (JSHR6_14040) comB2 1456716..1456997 (-) 282 WP_001272688.1 TrbC/VirB2 family protein Machinery gene
  M2Y46_RS07005 (JSHR6_14050) - 1457142..1457969 (-) 828 WP_248415359.1 DUF5718 family protein -
  M2Y46_RS07010 (JSHR6_14060) - 1458060..1459112 (-) 1053 WP_248415360.1 MnmA/TRMU family protein -
  M2Y46_RS07015 (JSHR6_14070) dnaG 1459109..1460788 (-) 1680 WP_248415361.1 DNA primase -
  M2Y46_RS07020 (JSHR6_14080) groES 1461061..1461417 (+) 357 WP_000671954.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10567.87 Da        Isoelectric Point: 9.1450

>NTDB_id=82503 M2Y46_RS07000 WP_001272688.1 1456716..1456997(-) (comB2) [Helicobacter pylori strain JSHR6]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNVLEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=82503 M2Y46_RS07000 WP_001272688.1 1456716..1456997(-) (comB2) [Helicobacter pylori strain JSHR6]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAATGTCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTCTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

97.849

100

0.978

Multiple sequence alignment