Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SE116_RS05900 Genome accession   NZ_CP138362
Coordinates   1229839..1230612 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain V315     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1224839..1235612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE116_RS05880 (SE116_05880) trmFO 1225183..1226490 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  SE116_RS05885 (SE116_05885) xerC 1226907..1227803 (+) 897 WP_001015609.1 tyrosine recombinase XerC -
  SE116_RS05890 (SE116_05890) hslV 1227800..1228345 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  SE116_RS05895 (SE116_05895) hslU 1228411..1229814 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  SE116_RS05900 (SE116_05900) codY 1229839..1230612 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SE116_RS05905 (SE116_05905) - 1230663..1230755 (+) 93 WP_031788481.1 hypothetical protein -
  SE116_RS05910 (SE116_05910) rpsB 1230954..1231721 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  SE116_RS05915 (SE116_05915) - 1231755..1231868 (+) 114 WP_001789890.1 hypothetical protein -
  SE116_RS05920 (SE116_05920) tsf 1231903..1232784 (+) 882 WP_000201387.1 translation elongation factor Ts -
  SE116_RS05925 (SE116_05925) pyrH 1232921..1233643 (+) 723 WP_000057330.1 UMP kinase -
  SE116_RS05930 (SE116_05930) frr 1233662..1234216 (+) 555 WP_001280006.1 ribosome recycling factor -
  SE116_RS05935 (SE116_05935) - 1234589..1235359 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=825025 SE116_RS05900 WP_000055337.1 1229839..1230612(+) (codY) [Staphylococcus aureus strain V315]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=825025 SE116_RS05900 WP_000055337.1 1229839..1230612(+) (codY) [Staphylococcus aureus strain V315]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCGCCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCGATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAGTCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428