Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SE087_RS06365 Genome accession   NZ_CP138360
Coordinates   1289777..1290550 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain 17CS1042     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1284777..1295550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE087_RS06345 (SE087_06345) trmFO 1285121..1286428 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  SE087_RS06350 (SE087_06350) xerC 1286845..1287741 (+) 897 WP_001015609.1 tyrosine recombinase XerC -
  SE087_RS06355 (SE087_06355) hslV 1287738..1288283 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  SE087_RS06360 (SE087_06360) hslU 1288349..1289752 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  SE087_RS06365 (SE087_06365) codY 1289777..1290550 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SE087_RS06370 (SE087_06370) - 1290601..1290693 (+) 93 WP_031788481.1 hypothetical protein -
  SE087_RS06375 (SE087_06375) rpsB 1290892..1291659 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  SE087_RS06380 (SE087_06380) - 1291693..1291806 (+) 114 WP_001789890.1 hypothetical protein -
  SE087_RS06385 (SE087_06385) tsf 1291841..1292722 (+) 882 WP_319096557.1 translation elongation factor Ts -
  SE087_RS06390 (SE087_06390) pyrH 1292859..1293581 (+) 723 WP_000057330.1 UMP kinase -
  SE087_RS06395 (SE087_06395) frr 1293600..1294154 (+) 555 WP_001280006.1 ribosome recycling factor -
  SE087_RS06400 (SE087_06400) - 1294527..1295297 (+) 771 WP_319096568.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=824938 SE087_RS06365 WP_000055337.1 1289777..1290550(+) (codY) [Staphylococcus aureus strain 17CS1042]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=824938 SE087_RS06365 WP_000055337.1 1289777..1290550(+) (codY) [Staphylococcus aureus strain 17CS1042]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCGCCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGTGGTACGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAGTCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428