Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   QJR60_RS10135 Genome accession   NZ_CP124285
Coordinates   2031313..2033172 (-) Length   619 a.a.
NCBI ID   WP_057538107.1    Uniprot ID   -
Organism   Paraclostridium sordellii strain C128     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2026313..2038172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJR60_RS10115 (QJR60_10100) - 2026786..2028240 (-) 1455 WP_057540131.1 HAMP domain-containing sensor histidine kinase -
  QJR60_RS10120 (QJR60_10105) - 2028243..2028932 (-) 690 WP_021128302.1 response regulator transcription factor -
  QJR60_RS10125 (QJR60_10110) asnB 2028952..2030853 (-) 1902 WP_206541484.1 asparagine synthase (glutamine-hydrolyzing) -
  QJR60_RS10130 (QJR60_10115) cspD 2031004..2031207 (-) 204 WP_021124043.1 cold-shock protein CspD -
  QJR60_RS10135 (QJR60_10120) rcrQ 2031313..2033172 (-) 1860 WP_057538107.1 ABC transporter ATP-binding protein Regulator
  QJR60_RS10140 (QJR60_10125) - 2033165..2035369 (-) 2205 WP_338558022.1 ABC transporter ATP-binding protein -
  QJR60_RS10145 (QJR60_10130) - 2035522..2035965 (+) 444 WP_021124036.1 MarR family transcriptional regulator -
  QJR60_RS10150 (QJR60_10135) - 2036006..2036194 (-) 189 WP_021128306.1 ferredoxin -
  QJR60_RS10155 (QJR60_10140) - 2036377..2036772 (-) 396 WP_338558026.1 hypothetical protein -
  QJR60_RS10160 (QJR60_10145) - 2036838..2037212 (-) 375 WP_057557915.1 hypothetical protein -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 68452.79 Da        Isoelectric Point: 5.4190

>NTDB_id=824804 QJR60_RS10135 WP_057538107.1 2031313..2033172(-) (rcrQ) [Paraclostridium sordellii strain C128]
MANNKKTMPKGPGMGGPKGMQGGEKAKDFKGTMKNLFNYLKPYRLSILIVIIFAIGSSAFSIVGPKVLGNATTEIFEGVV
RKIGGEGNGGIDFNYIGKILGILLGLYVISALFSYVQSFIMSGISQKVSYKLRKEISEKINRMPLSYFDKKTHGEVLSRV
TNDIDTLSQNLNQTMTQVITAVTTVIGVLIMMISISWQMTIVALLILPISGILISVVVKKSQSHFKSQQEYLGHVNGQVE
ETYGGHNIVKAFNGEEAAINEFNELNDKLYESAWKSQFLSGMMMPMMSFIGNIGYVLVSILGGYFTIKKTIEVGDILSFI
QYVRSFNQPIAQTAQVANIMQSMAAAAERAFEFLDEDEEVQTSENPASVENIEGNVSFDHVNFGYSEDKIIINNFTTNIK
AGQKVAIVGPTGAGKTTIVKLLMRFYDVNKGAILIDGHNIKDFNRSDLRSLFGMVLQDTWLFNGSIMENIRYSKLNASDE
EVIEAAKSAHVDHFVKTLPDGYKMELNEEANNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMENLME
GRTSFIIAHRLSTIKDADLILVMKDGDIVEQGSHEELLEKGGFYSSLYNSQFEECDEVC

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=824804 QJR60_RS10135 WP_057538107.1 2031313..2033172(-) (rcrQ) [Paraclostridium sordellii strain C128]
ATGGCTAATAATAAAAAAACTATGCCAAAAGGCCCAGGAATGGGTGGACCTAAAGGCATGCAAGGTGGAGAAAAAGCAAA
AGATTTTAAAGGTACTATGAAAAATCTTTTCAACTATTTAAAACCATATAGATTATCTATATTAATAGTTATTATATTTG
CAATAGGGAGTTCAGCTTTCTCTATTGTAGGACCTAAAGTATTAGGAAATGCTACTACAGAAATTTTTGAGGGAGTAGTA
AGAAAAATTGGTGGAGAAGGTAATGGAGGAATAGATTTTAATTATATAGGTAAGATTCTTGGAATACTTTTAGGCCTTTA
TGTAATTAGTGCATTATTTTCCTATGTTCAGTCGTTTATAATGTCTGGGATATCACAAAAGGTATCATATAAATTAAGAA
AAGAGATCTCAGAAAAAATAAATCGCATGCCACTATCATATTTTGATAAGAAAACTCATGGAGAAGTTTTATCTAGGGTG
ACAAATGATATAGATACACTAAGTCAAAACTTAAATCAAACTATGACTCAAGTTATAACTGCTGTTACTACTGTAATAGG
TGTACTTATAATGATGATATCTATAAGTTGGCAAATGACTATAGTTGCATTATTAATACTTCCTATTTCAGGAATATTAA
TATCTGTAGTTGTAAAAAAATCTCAAAGTCACTTTAAATCTCAACAAGAGTACTTAGGTCATGTAAATGGTCAAGTAGAA
GAGACTTATGGAGGACATAATATAGTAAAGGCTTTTAATGGAGAAGAAGCTGCAATAAATGAATTTAATGAACTTAATGA
TAAATTATATGAATCAGCATGGAAATCTCAATTCTTATCAGGAATGATGATGCCTATGATGAGTTTTATAGGTAATATAG
GATATGTTTTAGTATCTATATTAGGTGGATACTTTACAATTAAAAAGACTATAGAAGTAGGAGATATACTATCTTTTATA
CAATATGTAAGAAGCTTTAATCAACCAATAGCACAAACTGCTCAGGTTGCAAATATAATGCAATCTATGGCCGCTGCAGC
TGAGAGAGCCTTTGAATTTTTAGATGAAGATGAAGAAGTTCAAACAAGTGAAAATCCAGCAAGCGTTGAAAATATAGAAG
GAAATGTAAGTTTTGACCATGTAAACTTTGGATACAGTGAAGATAAAATAATTATAAATAACTTTACAACTAATATAAAA
GCTGGTCAAAAAGTAGCTATAGTTGGACCAACAGGTGCAGGAAAAACTACAATAGTTAAATTATTAATGCGCTTTTATGA
TGTAAACAAAGGAGCTATATTAATAGATGGACATAATATAAAAGACTTCAATAGAAGTGACTTACGTAGTCTATTTGGAA
TGGTTCTTCAAGATACATGGTTATTTAATGGAAGTATAATGGAAAATATAAGATATTCAAAGCTTAATGCAAGTGATGAA
GAAGTTATAGAGGCTGCTAAATCAGCACATGTAGATCACTTTGTAAAGACTCTTCCAGATGGATATAAAATGGAATTAAA
TGAAGAGGCTAATAATGTTTCACAAGGACAAAAACAACTTTTAACTATAGCTAGAGCCATTTTAGCAGACCCTAAAATAC
TTATATTAGATGAAGCTACAAGTTCTGTTGATACTCGTACAGAAGTACTTATACAAAAAGCTATGGAAAATCTGATGGAA
GGTAGAACTAGCTTTATAATAGCTCATAGACTTTCAACTATAAAAGATGCTGATTTAATACTTGTTATGAAGGATGGAGA
TATAGTAGAACAAGGTAGTCACGAGGAGCTATTAGAAAAGGGAGGATTCTATTCATCTTTATACAATAGCCAGTTTGAAG
AATGCGATGAAGTTTGTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(393-541)

ABC transporter transmembrane region (ABC_membrane)

(47-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.453

94.507

0.486