Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   QJR37_RS10235 Genome accession   NZ_CP124281
Coordinates   2067480..2069339 (-) Length   619 a.a.
NCBI ID   WP_330373393.1    Uniprot ID   A0A0C7R4U9
Organism   Paraclostridium sordellii strain C171     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2062480..2074339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJR37_RS10215 (QJR37_10210) - 2062954..2064408 (-) 1455 WP_055333888.1 HAMP domain-containing sensor histidine kinase -
  QJR37_RS10220 (QJR37_10215) - 2064411..2065100 (-) 690 WP_021128302.1 response regulator transcription factor -
  QJR37_RS10225 (QJR37_10220) asnB 2065120..2067021 (-) 1902 WP_258171583.1 asparagine synthase (glutamine-hydrolyzing) -
  QJR37_RS10230 (QJR37_10225) cspD 2067171..2067374 (-) 204 WP_055333892.1 cold-shock protein CspD -
  QJR37_RS10235 (QJR37_10230) rcrQ 2067480..2069339 (-) 1860 WP_330373393.1 ABC transporter ATP-binding protein Regulator
  QJR37_RS10240 (QJR37_10235) - 2069332..2071536 (-) 2205 WP_055333893.1 ABC transporter ATP-binding protein -
  QJR37_RS10245 (QJR37_10240) - 2071689..2072132 (+) 444 WP_055333894.1 MarR family transcriptional regulator -
  QJR37_RS10250 (QJR37_10245) - 2072175..2072363 (-) 189 WP_055333895.1 ferredoxin -
  QJR37_RS10255 (QJR37_10250) - 2072533..2072940 (-) 408 WP_055333897.1 hypothetical protein -
  QJR37_RS10260 (QJR37_10255) - 2073006..2073380 (-) 375 WP_055333898.1 hypothetical protein -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 68466.82 Da        Isoelectric Point: 5.4190

>NTDB_id=824788 QJR37_RS10235 WP_330373393.1 2067480..2069339(-) (rcrQ) [Paraclostridium sordellii strain C171]
MANNKKTMPKGPGMGGPKGMQGGEKAKDFKGTMKNLFNYLKPYRLSILIVIIFAIGSSAFSIVGPKVLGNATTEIFEGVV
RKIGGEGNGGIDFNYIGKILGILLGLYVISALFSYIQSFIMSGISQKVSYKLRKEISEKINRMPLSYFDKKTHGEVLSRV
TNDIDTLSQNLNQTMTQVITAVTTVIGVLIMMISISWQMTIVALLILPISGILISVVVKKSQSHFKSQQEYLGHVNGQVE
ETYGGHNIVKAFNGEEAAINEFNELNDKLYESAWKSQFLSGMMMPMMSFIGNIGYVLVSILGGYFTIKKTIEVGDILSFI
QYVRSFNQPIAQTAQVANIMQSMAAAAERAFEFLDEDEEVQTSENPASVENIEGNVSFDHVNFGYSEDKIIINNFTTNIK
AGQKVAIVGPTGAGKTTIVKLLMRFYDVNKGAILIDGHNIKDFNRSDLRSLFGMVLQDTWLFNGSIMENIRYSKLNASDE
EVIEAAKSAHVDHFVKTLPDGYKMELNEEANNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMENLME
GRTSFIIAHRLSTIKDADLILVMKDGDIVEQGSHEELLEKGGFYSSLYNSQFEECDEVC

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=824788 QJR37_RS10235 WP_330373393.1 2067480..2069339(-) (rcrQ) [Paraclostridium sordellii strain C171]
ATGGCTAATAATAAAAAAACTATGCCAAAAGGCCCAGGAATGGGTGGACCTAAAGGCATGCAAGGTGGAGAAAAAGCAAA
AGATTTTAAAGGTACTATGAAAAATCTTTTCAACTATTTAAAACCATATAGATTATCTATATTAATAGTTATTATATTCG
CAATAGGGAGTTCAGCTTTCTCTATTGTAGGACCTAAAGTATTAGGAAATGCTACTACAGAAATTTTTGAGGGAGTAGTA
AGAAAAATTGGTGGAGAAGGTAATGGAGGAATAGATTTTAATTATATAGGTAAGATTCTTGGAATACTTTTAGGCCTTTA
TGTAATTAGTGCATTATTTTCTTATATTCAGTCATTTATAATGTCTGGGATATCACAAAAGGTATCATATAAATTAAGAA
AAGAAATCTCAGAAAAAATAAATCGTATGCCACTATCATATTTTGATAAGAAAACTCATGGAGAAGTTTTATCTAGGGTT
ACAAATGATATAGACACATTAAGTCAAAACTTAAATCAAACTATGACTCAAGTTATAACTGCTGTTACTACTGTAATAGG
GGTACTTATAATGATGATATCTATAAGTTGGCAAATGACTATAGTTGCATTATTAATACTTCCTATTTCAGGAATATTAA
TATCTGTAGTTGTAAAAAAATCTCAAAGTCACTTTAAATCTCAACAAGAGTACTTAGGTCATGTAAATGGTCAAGTAGAA
GAGACTTATGGAGGACATAATATAGTAAAGGCTTTTAACGGAGAAGAAGCTGCAATAAATGAGTTTAATGAACTTAATGA
TAAATTATATGAATCAGCATGGAAATCTCAATTCTTATCAGGAATGATGATGCCTATGATGAGTTTTATAGGTAATATAG
GATATGTTTTAGTATCTATATTAGGTGGATACTTCACAATTAAAAAGACTATAGAAGTAGGAGATATACTATCTTTCATA
CAATATGTAAGAAGTTTTAATCAACCAATAGCACAAACTGCTCAGGTTGCAAATATAATGCAATCTATGGCGGCTGCAGC
TGAGAGAGCATTTGAATTTTTAGATGAAGATGAAGAAGTTCAAACAAGTGAAAATCCAGCAAGTGTTGAAAATATAGAAG
GAAATGTAAGTTTTGACCATGTAAACTTTGGATACAGTGAAGATAAAATAATCATAAATAACTTTACAACTAATATAAAA
GCTGGTCAAAAAGTAGCTATAGTTGGACCAACAGGTGCAGGTAAAACTACAATAGTTAAATTATTAATGCGTTTTTATGA
TGTAAACAAAGGAGCTATCTTAATAGATGGGCATAATATAAAAGACTTCAATAGAAGTGACTTACGTAGTCTATTTGGAA
TGGTTCTTCAAGATACATGGTTATTTAATGGAAGTATAATGGAAAATATAAGATATTCAAAGCTTAATGCAAGTGATGAA
GAAGTTATAGAGGCTGCTAAATCAGCACATGTAGATCACTTTGTAAAGACTCTTCCAGATGGATACAAAATGGAATTAAA
TGAAGAGGCTAATAATGTGTCACAAGGACAAAAGCAACTTTTAACTATAGCTAGAGCTATTTTAGCAGATCCTAAAATAC
TTATATTAGATGAAGCCACAAGTTCTGTTGATACTCGTACAGAAGTACTTATACAAAAAGCTATGGAAAATCTTATGGAA
GGTAGAACTAGCTTTATAATAGCTCATAGACTTTCAACTATAAAAGATGCTGATTTAATACTTGTTATGAAGGATGGAGA
TATAGTAGAACAAGGTAGTCATGAGGAACTATTAGAAAAGGGAGGATTTTACTCATCTTTATACAATAGCCAGTTTGAAG
AATGCGATGAAGTTTGTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(47-329)

ABC transporter (ABC_tran)

(393-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C7R4U9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.453

94.507

0.486