Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   SD209_RS29925 Genome accession   NZ_CP138326
Coordinates   6316685..6317410 (-) Length   241 a.a.
NCBI ID   WP_003117927.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain JBPA     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6311685..6322410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD209_RS29900 (SD209_29900) - 6312157..6312672 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  SD209_RS29905 (SD209_29905) rarD 6313362..6314258 (-) 897 WP_003103301.1 EamA family transporter RarD -
  SD209_RS29910 (SD209_29910) - 6314461..6315435 (-) 975 WP_003084794.1 serine/threonine protein kinase -
  SD209_RS29915 (SD209_29915) - 6315497..6316255 (-) 759 WP_003103305.1 TOBE domain-containing protein -
  SD209_RS29920 (SD209_29920) - 6316323..6316643 (-) 321 WP_003103307.1 YfiM family lipoprotein -
  SD209_RS29925 (SD209_29925) comF 6316685..6317410 (-) 726 WP_003117927.1 ComF family protein Machinery gene
  SD209_RS29930 (SD209_29930) - 6317549..6317842 (-) 294 WP_023086814.1 hypothetical protein -
  SD209_RS29935 (SD209_29935) - 6317896..6318822 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  SD209_RS29940 (SD209_29940) - 6318940..6319698 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  SD209_RS29945 (SD209_29945) - 6319775..6320023 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  SD209_RS29950 (SD209_29950) - 6320034..6321410 (+) 1377 WP_003113254.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  SD209_RS29955 (SD209_29955) - 6321412..6322290 (+) 879 WP_003117928.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27062.56 Da        Isoelectric Point: 11.2212

>NTDB_id=824749 SD209_RS29925 WP_003117927.1 6316685..6317410(-) (comF) [Pseudomonas aeruginosa strain JBPA]
MSFPLRPLTRWLLPPPACLLCAARSDQPARPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=824749 SD209_RS29925 WP_003117927.1 6316685..6317410(-) (comF) [Pseudomonas aeruginosa strain JBPA]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGGCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.017

100

0.382