Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   M2Y48_RS07365 Genome accession   NZ_AP023344
Coordinates   1532691..1532972 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain JSHR3     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1527691..1537972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Y48_RS07345 (JSHR3_14810) - 1528403..1529743 (-) 1341 WP_172620318.1 hypothetical protein -
  M2Y48_RS07355 (JSHR3_14820) comB4 1530063..1532426 (-) 2364 WP_212847038.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  M2Y48_RS07360 (JSHR3_14830) comB3 1532428..1532691 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  M2Y48_RS07365 (JSHR3_14840) comB2 1532691..1532972 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  M2Y48_RS07370 (JSHR3_14850) - 1533117..1533944 (-) 828 WP_108304347.1 DUF5718 family protein -
  M2Y48_RS07375 (JSHR3_14860) - 1534036..1535088 (-) 1053 WP_021301516.1 MnmA/TRMU family protein -
  M2Y48_RS07380 (JSHR3_14870) dnaG 1535085..1536764 (-) 1680 WP_248419878.1 DNA primase -
  M2Y48_RS07385 (JSHR3_14880) groES 1537039..1537395 (+) 357 WP_000671954.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=82462 M2Y48_RS07365 WP_001272686.1 1532691..1532972(-) (comB2) [Helicobacter pylori strain JSHR3]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=82462 M2Y48_RS07365 WP_001272686.1 1532691..1532972(-) (comB2) [Helicobacter pylori strain JSHR3]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment